RNA–Protein interactions for RNA: ENST00000593282.5

LINC01539-206, Transcript of long intergenic non-protein coding RNA 1539, humanhuman

TSL 4 BASIC

Gene LINC01539, Length 678 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01539-206ENST00000593282 AEBP2Q6ZN18 517 aaPredicted RBP22.27■■□□□ 1.16
LINC01539-206ENST00000593282 CHIC1Q5VXU3 224 aa21.25■□□□□ 0.99
LINC01539-206ENST00000593282 SENP3Q9H4L4 574 aaPredicted RBP19.09■□□□□ 0.65
LINC01539-206ENST00000593282 PHF23Q9BUL5 403 aaPredicted RBP18.81■□□□□ 0.6
LINC01539-206ENST00000593282 FOXD1Q16676 465 aa17.73■□□□□ 0.43
LINC01539-206ENST00000593282 PLPPR3Q6T4P5 718 aa17.05■□□□□ 0.32
LINC01539-206ENST00000593282 PIAS4Q8N2W9 510 aaPredicted RBP16.66■□□□□ 0.26
LINC01539-206ENST00000593282 MSH5O43196 834 aa16.64■□□□□ 0.25
LINC01539-206ENST00000593282 ADRA2BP18089 450 aa16.58■□□□□ 0.24
LINC01539-206ENST00000593282 PPP6R1Q9UPN7 881 aa16.57■□□□□ 0.24
LINC01539-206ENST00000593282 POTEDQ86YR6 584 aa16.11■□□□□ 0.17
LINC01539-206ENST00000593282 SCAF1Q9H7N4 1312 aaKnown RBP15.25■□□□□ 0.03
LINC01539-206ENST00000593282 MAPK8IP2Q13387 824 aaPredicted RBP15.2■□□□□ 0.02
LINC01539-206ENST00000593282 DMRT2Q9Y5R5 561 aa15.11■□□□□ 0.01
LINC01539-206ENST00000593282 PPP4R3CPQ6ZMV5 832 aa14.94□□□□□ -0.02
LINC01539-206ENST00000593282 CNKSR2Q8WXI2 1034 aa14.65□□□□□ -0.06
LINC01539-206ENST00000593282 DCAF8L1A6NGE4 600 aa14.63□□□□□ -0.07
LINC01539-206ENST00000593282 HOXD11P31277 338 aaPredicted RBP14.54□□□□□ -0.08
LINC01539-206ENST00000593282 RNF216Q9NWF9 866 aaPredicted RBP14.48□□□□□ -0.09
LINC01539-206ENST00000593282 NCBP3Q53F19 620 aaKnown RBP14.44□□□□□ -0.1
LINC01539-206ENST00000593282 CACNB1Q02641 598 aaPredicted RBP14.29□□□□□ -0.12
LINC01539-206ENST00000593282 NPM3O75607 178 aaKnown RBP14.15□□□□□ -0.14
LINC01539-206ENST00000593282 RNF39Q9H2S5 420 aa14.14□□□□□ -0.15
LINC01539-206ENST00000593282 DNAJC5BQ9UF47 199 aa14.01□□□□□ -0.17
LINC01539-206ENST00000593282 C1QBPQ07021 282 aaKnown RBP13.98□□□□□ -0.17
LINC01539-206ENST00000593282 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.98□□□□□ -0.17
LINC01539-206ENST00000593282 KCNA4P22459 653 aa13.92□□□□□ -0.18
LINC01539-206ENST00000593282 U3KPZ7 1027 aaPredicted RBP13.6□□□□□ -0.23
LINC01539-206ENST00000593282 CAPN15O75808 1086 aa13.46□□□□□ -0.25
LINC01539-206ENST00000593282 SLC4A2P04920 1241 aa13.45□□□□□ -0.26
LINC01539-206ENST00000593282 SPINK5Q9NQ38 1064 aaPredicted RBP13.4□□□□□ -0.26
LINC01539-206ENST00000593282 APLP2Q06481 763 aa13.35□□□□□ -0.27
LINC01539-206ENST00000593282 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.32□□□□□ -0.28
LINC01539-206ENST00000593282 HNRNPUL2Q1KMD3 747 aaKnown RBP13.32□□□□□ -0.28
LINC01539-206ENST00000593282 DSG3P32926 999 aa13.27□□□□□ -0.29
LINC01539-206ENST00000593282 TRHP20396 242 aaPredicted RBP13.26□□□□□ -0.29
LINC01539-206ENST00000593282 SAMD1Q6SPF0 538 aaPredicted RBP13.23□□□□□ -0.29
LINC01539-206ENST00000593282 SLC4A1APQ9BWU0 796 aaKnown RBP13.21□□□□□ -0.29
LINC01539-206ENST00000593282 ZNF219Q9P2Y4 722 aaPredicted RBP13.21□□□□□ -0.29
LINC01539-206ENST00000593282 ABCB7O75027 752 aa13.14□□□□□ -0.31
LINC01539-206ENST00000593282 MYCNP04198 464 aaPredicted RBP13.14□□□□□ -0.31
LINC01539-206ENST00000593282 FOXD4L1Q9NU39 408 aa13.01□□□□□ -0.33
LINC01539-206ENST00000593282 POLA2Q14181 598 aa12.86□□□□□ -0.35
LINC01539-206ENST00000593282 ZBTB22O15209 634 aa12.75□□□□□ -0.37
LINC01539-206ENST00000593282 ATF5Q9Y2D1 282 aaPredicted RBP12.75□□□□□ -0.37
LINC01539-206ENST00000593282 RBM42Q9BTD8 480 aaKnown RBP12.74□□□□□ -0.37
LINC01539-206ENST00000593282 POTEHQ6S545 545 aa12.67□□□□□ -0.38
LINC01539-206ENST00000593282 ZBTB12Q9Y330 459 aaPredicted RBP12.65□□□□□ -0.38
LINC01539-206ENST00000593282 ATXN8OSP0DMR3 200 aa12.58□□□□□ -0.4
LINC01539-206ENST00000593282 OSCARQ8IYS5 282 aa12.46□□□□□ -0.41
LINC01539-206ENST00000593282 AKT1S1Q96B36 256 aa12.42□□□□□ -0.42
LINC01539-206ENST00000593282 CHRDL2Q6WN34 429 aa12.4□□□□□ -0.42
LINC01539-206ENST00000593282 FBLN2P98095 1184 aa12.38□□□□□ -0.43
LINC01539-206ENST00000593282 REM2Q8IYK8 340 aaPredicted RBP12.29□□□□□ -0.44
LINC01539-206ENST00000593282 CSRNP3Q8WYN3 585 aa12.23□□□□□ -0.45
LINC01539-206ENST00000593282 SPDYE2BA6NHP3 402 aa12.22□□□□□ -0.45
LINC01539-206ENST00000593282 SPDYE6P0CI01 402 aa12.22□□□□□ -0.45
LINC01539-206ENST00000593282 SPDYE2Q495Y8 402 aa12.22□□□□□ -0.45
LINC01539-206ENST00000593282 EHMT2Q96KQ7 1210 aa12.22□□□□□ -0.45
LINC01539-206ENST00000593282 PITPNM1O00562 1244 aa12.17□□□□□ -0.46
LINC01539-206ENST00000593282 MKRN4PQ13434 485 aaPredicted RBP12.16□□□□□ -0.46
LINC01539-206ENST00000593282 PIP4P2Q8N4L2 257 aa12.11□□□□□ -0.47
LINC01539-206ENST00000593282 ZNF692Q9BU19 519 aaPredicted RBP12.11□□□□□ -0.47
LINC01539-206ENST00000593282 CLEC11AQ9Y240 323 aa12.05□□□□□ -0.48
LINC01539-206ENST00000593282 SPDYE1Q8NFV5 336 aaPredicted RBP12.02□□□□□ -0.49
LINC01539-206ENST00000593282 FXR2P51116 673 aaKnown RBP eCLIP12.01□□□□□ -0.49
LINC01539-206ENST00000593282 SSUH2Q9Y2M2 353 aa12.01□□□□□ -0.49
LINC01539-206ENST00000593282 HAX1O00165 279 aa11.94□□□□□ -0.5
LINC01539-206ENST00000593282 PABPN1Q86U42 306 aaKnown RBP eCLIP11.92□□□□□ -0.5
LINC01539-206ENST00000593282 SP7Q8TDD2 431 aaPredicted RBP11.9□□□□□ -0.5
LINC01539-206ENST00000593282 PRKAR2AP13861 404 aaKnown RBP11.89□□□□□ -0.51
LINC01539-206ENST00000593282 PRR29P0C7W0 189 aa11.83□□□□□ -0.52
LINC01539-206ENST00000593282 CHADLQ6NUI6 762 aa11.75□□□□□ -0.53
LINC01539-206ENST00000593282 SPDYE4A6NLX3 237 aa11.7□□□□□ -0.54
LINC01539-206ENST00000593282 EVX2Q03828 476 aa11.67□□□□□ -0.54
LINC01539-206ENST00000593282 C19orf67A6NJJ6 358 aa11.63□□□□□ -0.55
LINC01539-206ENST00000593282 STAG3Q9UJ98 1225 aa11.63□□□□□ -0.55
LINC01539-206ENST00000593282 FARP1Q9Y4F1 1045 aaPredicted RBP11.56□□□□□ -0.56
LINC01539-206ENST00000593282 CD44P16070 742 aaKnown RBP11.52□□□□□ -0.57
LINC01539-206ENST00000593282 GABBR2O75899 941 aa11.47□□□□□ -0.57
LINC01539-206ENST00000593282 CREBZFQ9NS37 354 aa11.46□□□□□ -0.57
LINC01539-206ENST00000593282 ZRANB1Q9UGI0 708 aa11.38□□□□□ -0.59
LINC01539-206ENST00000593282 PAK3O75914 559 aaPredicted RBP11.36□□□□□ -0.59
LINC01539-206ENST00000593282 NPM1P06748 294 aaKnown RBP eCLIP11.35□□□□□ -0.59
LINC01539-206ENST00000593282 CLCN6P51797 869 aa11.33□□□□□ -0.6
LINC01539-206ENST00000593282 PROM2Q8N271 834 aa11.3□□□□□ -0.6
LINC01539-206ENST00000593282 ZNF579Q8NAF0 562 aaKnown RBP11.3□□□□□ -0.6
LINC01539-206ENST00000593282 PLEKHG5O94827 1062 aa11.26□□□□□ -0.61
LINC01539-206ENST00000593282 DCBLD2Q96PD2 775 aa11.26□□□□□ -0.61
LINC01539-206ENST00000593282 MNX1P50219 401 aaPredicted RBP11.22□□□□□ -0.61
LINC01539-206ENST00000593282 MIER1Q8N108 512 aa11.19□□□□□ -0.62
LINC01539-206ENST00000593282 PHF12Q96QT6 1004 aa11.19□□□□□ -0.62
LINC01539-206ENST00000593282 FKBP8Q14318 412 aa11.18□□□□□ -0.62
LINC01539-206ENST00000593282 POTEIP0CG38 1075 aa11.17□□□□□ -0.62
LINC01539-206ENST00000593282 LHX8Q68G74 356 aa11.17□□□□□ -0.62
LINC01539-206ENST00000593282 GALR2O43603 387 aaPredicted RBP11.16□□□□□ -0.62
LINC01539-206ENST00000593282 PLCD3Q8N3E9 789 aa11.14□□□□□ -0.63
LINC01539-206ENST00000593282 TSPYL2Q9H2G4 693 aaPredicted RBP11.14□□□□□ -0.63
LINC01539-206ENST00000593282 MS4A3Q96HJ5 214 aa11.04□□□□□ -0.64
LINC01539-206ENST00000593282 ZBTB47Q9UFB7 747 aaPredicted RBP11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms