Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.59
HNF4AP41235 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
HNF4AP41235 AC093591.2-201ENST00000565254 3843 ntBASIC5.09□□□□□ -1.59
HNF4AP41235 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
HNF4AP41235 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
HNF4AP41235 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC5.09□□□□□ -1.59
HNF4AP41235 AL034370.1-201ENST00000397254 1590 ntBASIC5.09□□□□□ -1.59
HNF4AP41235 UGT2B10-202ENST00000458688 1424 ntTSL 2 BASIC5.09□□□□□ -1.59
HNF4AP41235 CASC19-221ENST00000641309 1382 ntBASIC5.09□□□□□ -1.59
HNF4AP41235 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
HNF4AP41235 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
HNF4AP41235 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
HNF4AP41235 RN7SKP162-201ENST00000363605 345 ntBASIC5.09□□□□□ -1.59
HNF4AP41235 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
HNF4AP41235 MIR589-201ENST00000385238 99 ntBASIC5.09□□□□□ -1.59
HNF4AP41235 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
HNF4AP41235 RNU1-149P-201ENST00000390870 161 ntBASIC5.09□□□□□ -1.59
HNF4AP41235 RANP4-201ENST00000413361 655 ntBASIC5.09□□□□□ -1.59
HNF4AP41235 COX5BP7-201ENST00000414780 274 ntBASIC5.09□□□□□ -1.59
HNF4AP41235 OR13Z1P-201ENST00000416141 834 ntBASIC5.09□□□□□ -1.59
HNF4AP41235 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC5.09□□□□□ -1.59
HNF4AP41235 NOP56P2-201ENST00000447491 769 ntBASIC5.09□□□□□ -1.59
HNF4AP41235 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC5.09□□□□□ -1.59
HNF4AP41235 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC5.09□□□□□ -1.59
HNF4AP41235 PRPF38AP1-201ENST00000451976 933 ntBASIC5.09□□□□□ -1.59
HNF4AP41235 MTND2P3-201ENST00000452458 470 ntBASIC5.09□□□□□ -1.59
HNF4AP41235 RN7SL189P-201ENST00000468631 289 ntBASIC5.09□□□□□ -1.59
HNF4AP41235 UBA52P7-201ENST00000486088 380 ntBASIC5.09□□□□□ -1.59
HNF4AP41235 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
HNF4AP41235 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC5.09□□□□□ -1.59
HNF4AP41235 RN7SL591P-201ENST00000496150 292 ntBASIC5.09□□□□□ -1.59
HNF4AP41235 SUMO1P1-201ENST00000497904 306 ntBASIC5.09□□□□□ -1.59
HNF4AP41235 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC5.09□□□□□ -1.59
HNF4AP41235 ATP5LP3-201ENST00000514223 304 ntBASIC5.09□□□□□ -1.59
HNF4AP41235 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC5.09□□□□□ -1.59
HNF4AP41235 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC5.09□□□□□ -1.59
HNF4AP41235 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC5.09□□□□□ -1.59
HNF4AP41235 IGKV2-18-201ENST00000522607 343 ntBASIC5.09□□□□□ -1.59
HNF4AP41235 ASB8-215ENST00000540782 659 ntTSL 3 BASIC5.09□□□□□ -1.59
HNF4AP41235 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC5.09□□□□□ -1.59
HNF4AP41235 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.59
HNF4AP41235 AC126177.5-201ENST00000549599 178 ntBASIC5.09□□□□□ -1.59
HNF4AP41235 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC5.09□□□□□ -1.59
HNF4AP41235 AC040958.1-201ENST00000561102 201 ntBASIC5.09□□□□□ -1.59
HNF4AP41235 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC5.09□□□□□ -1.59
HNF4AP41235 AC090312.1-201ENST00000580637 348 ntBASIC5.09□□□□□ -1.59
HNF4AP41235 RN7SL708P-201ENST00000580952 299 ntBASIC5.09□□□□□ -1.59
HNF4AP41235 PRPF19P1-201ENST00000584766 898 ntBASIC5.09□□□□□ -1.59
HNF4AP41235 AC011626.1-201ENST00000604710 562 ntBASIC5.09□□□□□ -1.59
HNF4AP41235 AL023583.1-201ENST00000607518 1143 ntBASIC5.09□□□□□ -1.59
HNF4AP41235 AC131238.1-201ENST00000617135 328 ntBASIC5.09□□□□□ -1.59
HNF4AP41235 AC009704.2-201ENST00000618739 483 ntBASIC5.09□□□□□ -1.59
HNF4AP41235 AC073592.7-201ENST00000623659 507 ntBASIC5.09□□□□□ -1.59
HNF4AP41235 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC5.09□□□□□ -1.59
HNF4AP41235 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
HNF4AP41235 AC093311.1-201ENST00000506586 2021 ntBASIC5.09□□□□□ -1.6
HNF4AP41235 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
HNF4AP41235 ADAM5-202ENST00000399789 1942 ntBASIC5.09□□□□□ -1.6
HNF4AP41235 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC5.09□□□□□ -1.6
HNF4AP41235 AC104260.2-201ENST00000623551 3497 ntBASIC5.09□□□□□ -1.6
HNF4AP41235 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
HNF4AP41235 USP45-204ENST00000369233 2514 ntTSL 5 BASIC5.08□□□□□ -1.6
HNF4AP41235 CCT8P1-201ENST00000413611 1657 ntBASIC5.08□□□□□ -1.6
HNF4AP41235 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC5.08□□□□□ -1.6
HNF4AP41235 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC5.08□□□□□ -1.6
HNF4AP41235 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
HNF4AP41235 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
HNF4AP41235 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
HNF4AP41235 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC5.08□□□□□ -1.6
HNF4AP41235 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC5.08□□□□□ -1.6
HNF4AP41235 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC5.08□□□□□ -1.6
HNF4AP41235 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
HNF4AP41235 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
HNF4AP41235 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC5.08□□□□□ -1.6
HNF4AP41235 CYP1D1P-201ENST00000416662 1433 ntBASIC5.08□□□□□ -1.6
HNF4AP41235 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC5.08□□□□□ -1.6
HNF4AP41235 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC5.08□□□□□ -1.6
HNF4AP41235 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
HNF4AP41235 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC5.08□□□□□ -1.6
HNF4AP41235 DDX18P4-201ENST00000511690 1966 ntBASIC5.08□□□□□ -1.6
HNF4AP41235 AL022322.2-201ENST00000624072 20397 ntBASIC5.08□□□□□ -1.6
HNF4AP41235 SPATA4-201ENST00000280191 1169 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
HNF4AP41235 SNORA51.1-201ENST00000363243 140 ntBASIC5.08□□□□□ -1.6
HNF4AP41235 RNU4-31P-201ENST00000384211 141 ntBASIC5.08□□□□□ -1.6
HNF4AP41235 RNA5SP339-201ENST00000390987 122 ntBASIC5.08□□□□□ -1.6
HNF4AP41235 OR8V1P-201ENST00000395193 873 ntBASIC5.08□□□□□ -1.6
HNF4AP41235 AL391361.1-201ENST00000405580 489 ntBASIC5.08□□□□□ -1.6
HNF4AP41235 AL590623.1-201ENST00000427864 105 ntBASIC5.08□□□□□ -1.6
HNF4AP41235 RPL12P28-201ENST00000430852 489 ntBASIC5.08□□□□□ -1.6
HNF4AP41235 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC5.08□□□□□ -1.6
HNF4AP41235 CLUHP1-201ENST00000435012 1190 ntBASIC5.08□□□□□ -1.6
HNF4AP41235 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC5.08□□□□□ -1.6
HNF4AP41235 BX842559.2-201ENST00000451418 605 ntBASIC5.08□□□□□ -1.6
HNF4AP41235 AP000942.1-201ENST00000463969 747 ntBASIC5.08□□□□□ -1.6
HNF4AP41235 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC5.08□□□□□ -1.6
HNF4AP41235 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC5.08□□□□□ -1.6
HNF4AP41235 TBCA-207ENST00000520039 157 ntTSL 3 BASIC5.08□□□□□ -1.6
HNF4AP41235 HMGB1P46-201ENST00000520062 610 ntBASIC5.08□□□□□ -1.6
HNF4AP41235 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC5.08□□□□□ -1.6
HNF4AP41235 AC021483.2-201ENST00000567415 758 ntBASIC5.08□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 71.9 ms