Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC2.57□□□□□ -2
CHKB-CPT1BH3BT56 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC2.57□□□□□ -2
CHKB-CPT1BH3BT56 MFSD8-220ENST00000641243 1422 ntBASIC2.57□□□□□ -2
CHKB-CPT1BH3BT56 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC2.57□□□□□ -2
CHKB-CPT1BH3BT56 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
CHKB-CPT1BH3BT56 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC2.57□□□□□ -2
CHKB-CPT1BH3BT56 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
CHKB-CPT1BH3BT56 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC2.57□□□□□ -2
CHKB-CPT1BH3BT56 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 ZNF962P-201ENST00000443465 3140 ntBASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 SNORD6-201ENST00000365444 73 ntBASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 CRP-203ENST00000368111 512 ntTSL 3 BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 SNORA2.3-201ENST00000383920 135 ntBASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 PSMA6P1-201ENST00000400275 741 ntBASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 AL391869.1-201ENST00000414581 475 ntTSL 3 BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 QRSL1P2-201ENST00000418582 964 ntBASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 AL662874.1-201ENST00000426065 230 ntBASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 TRAPPC2P5-201ENST00000426293 308 ntBASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 AC073335.1-201ENST00000427776 363 ntBASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 USP9YP31-201ENST00000431405 881 ntBASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 AL353662.1-201ENST00000439099 327 ntBASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 LINC00867-203ENST00000445161 580 ntTSL 2 BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 TDGF1P1-201ENST00000445734 527 ntBASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 AL162151.2-201ENST00000448875 158 ntBASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 CDKN2AIPNLP1-201ENST00000460287 302 ntBASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 RN7SL441P-201ENST00000492388 296 ntBASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 HLTF-AS1-201ENST00000492461 415 ntTSL 3 BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 AP001086.1-201ENST00000494882 321 ntBASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 AC009567.2-201ENST00000502989 349 ntBASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 AC084048.1-201ENST00000505494 640 ntTSL 3 BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 AC114956.3-202ENST00000505645 482 ntTSL 5 BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 AC116634.1-201ENST00000506926 447 ntTSL 5 BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 HMGB1P44-201ENST00000508597 572 ntBASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 AC015795.1-201ENST00000513669 327 ntBASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 IGKV1OR2-1-201ENST00000514060 354 ntBASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 AC096661.1-201ENST00000515870 822 ntBASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 A2MP1-201ENST00000543404 1201 ntTSL 5 BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 AL135838.1-201ENST00000556080 235 ntTSL 3 BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 MIR5047-201ENST00000579212 100 ntBASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 SNORD39.2-201ENST00000579995 76 ntBASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 VN1R84P-201ENST00000593697 235 ntBASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 AC008395.1-201ENST00000601752 607 ntTSL 5 BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 AL589765.6-201ENST00000601909 549 ntBASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 BMS1P7-201ENST00000602440 1052 ntBASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 SMIM12P1-201ENST00000603004 274 ntBASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 CARSP1-201ENST00000603171 889 ntBASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 AC068631.1-255ENST00000608173 588 ntTSL 5 BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 AC012531.5-201ENST00000611375 151 ntBASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 AL138721.1-201ENST00000616756 179 ntBASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 AC015804.1-201ENST00000622935 435 ntBASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 C2orf27A-204ENST00000623058 969 ntBASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 CR589904.1-203ENST00000636515 318 ntBASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 AC233968.1-201ENST00000611212 1300 ntBASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 AC009643.2-201ENST00000603543 1448 ntBASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 LINC01990-201ENST00000609293 1487 ntTSL 1 (best) BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
CHKB-CPT1BH3BT56 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 AC093908.1-201ENST00000623125 8092 ntBASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
CHKB-CPT1BH3BT56 RGS2-201ENST00000235382 1354 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 107.3 ms