Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
SIX2Q9NPC8 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
SIX2Q9NPC8 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC20.96■□□□□ 0.95
SIX2Q9NPC8 POM121L13P-201ENST00000422362 380 ntBASIC20.96■□□□□ 0.95
SIX2Q9NPC8 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC20.96■□□□□ 0.95
SIX2Q9NPC8 NME1-207ENST00000480143 964 ntTSL 2 BASIC20.96■□□□□ 0.95
SIX2Q9NPC8 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC20.96■□□□□ 0.95
SIX2Q9NPC8 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC20.96■□□□□ 0.95
SIX2Q9NPC8 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC20.96■□□□□ 0.95
SIX2Q9NPC8 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SIX2Q9NPC8 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC20.96■□□□□ 0.95
SIX2Q9NPC8 SDHAP1-207ENST00000440850 2000 ntBASIC20.95■□□□□ 0.94
SIX2Q9NPC8 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SIX2Q9NPC8 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC20.95■□□□□ 0.94
SIX2Q9NPC8 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC20.95■□□□□ 0.94
SIX2Q9NPC8 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
SIX2Q9NPC8 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
SIX2Q9NPC8 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
SIX2Q9NPC8 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC20.95■□□□□ 0.94
SIX2Q9NPC8 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC20.95■□□□□ 0.94
SIX2Q9NPC8 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SIX2Q9NPC8 GAS7-202ENST00000396115 929 ntTSL 5 BASIC20.95■□□□□ 0.94
SIX2Q9NPC8 THEM4-205ENST00000489410 643 ntTSL 2 BASIC20.95■□□□□ 0.94
SIX2Q9NPC8 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC20.95■□□□□ 0.94
SIX2Q9NPC8 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
SIX2Q9NPC8 Six3os1_6.1-201ENST00000620790 196 ntBASIC20.95■□□□□ 0.94
SIX2Q9NPC8 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SIX2Q9NPC8 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SIX2Q9NPC8 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
SIX2Q9NPC8 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
SIX2Q9NPC8 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SIX2Q9NPC8 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SIX2Q9NPC8 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC20.94■□□□□ 0.94
SIX2Q9NPC8 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SIX2Q9NPC8 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SIX2Q9NPC8 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC20.94■□□□□ 0.94
SIX2Q9NPC8 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC20.94■□□□□ 0.94
SIX2Q9NPC8 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC20.94■□□□□ 0.94
SIX2Q9NPC8 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SIX2Q9NPC8 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SIX2Q9NPC8 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC20.94■□□□□ 0.94
SIX2Q9NPC8 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
SIX2Q9NPC8 ANKRD18DP-204ENST00000455355 1975 ntBASIC20.94■□□□□ 0.94
SIX2Q9NPC8 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC20.93■□□□□ 0.94
SIX2Q9NPC8 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC20.93■□□□□ 0.94
SIX2Q9NPC8 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
SIX2Q9NPC8 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC20.93■□□□□ 0.94
SIX2Q9NPC8 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SIX2Q9NPC8 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC20.93■□□□□ 0.94
SIX2Q9NPC8 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SIX2Q9NPC8 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SIX2Q9NPC8 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC20.93■□□□□ 0.94
SIX2Q9NPC8 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC20.93■□□□□ 0.94
SIX2Q9NPC8 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SIX2Q9NPC8 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC20.93■□□□□ 0.94
SIX2Q9NPC8 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SIX2Q9NPC8 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SIX2Q9NPC8 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
SIX2Q9NPC8 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
SIX2Q9NPC8 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SIX2Q9NPC8 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
SIX2Q9NPC8 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SIX2Q9NPC8 AC141586.3-201ENST00000562166 1838 ntBASIC20.92■□□□□ 0.94
SIX2Q9NPC8 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SIX2Q9NPC8 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SIX2Q9NPC8 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SIX2Q9NPC8 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
SIX2Q9NPC8 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC20.92■□□□□ 0.94
SIX2Q9NPC8 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC20.92■□□□□ 0.94
SIX2Q9NPC8 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
SIX2Q9NPC8 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC20.92■□□□□ 0.94
SIX2Q9NPC8 AC233263.1-201ENST00000578059 224 ntBASIC20.92■□□□□ 0.94
SIX2Q9NPC8 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SIX2Q9NPC8 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC20.92■□□□□ 0.94
SIX2Q9NPC8 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SIX2Q9NPC8 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
SIX2Q9NPC8 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SIX2Q9NPC8 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SIX2Q9NPC8 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SIX2Q9NPC8 AL161938.1-201ENST00000569833 2180 ntBASIC20.92■□□□□ 0.94
SIX2Q9NPC8 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC20.92■□□□□ 0.94
SIX2Q9NPC8 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SIX2Q9NPC8 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
SIX2Q9NPC8 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
SIX2Q9NPC8 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.91■□□□□ 0.94
SIX2Q9NPC8 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SIX2Q9NPC8 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SIX2Q9NPC8 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
SIX2Q9NPC8 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SIX2Q9NPC8 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SIX2Q9NPC8 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SIX2Q9NPC8 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC20.91■□□□□ 0.94
SIX2Q9NPC8 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SIX2Q9NPC8 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC20.91■□□□□ 0.94
SIX2Q9NPC8 RNA5SP413-201ENST00000516373 109 ntBASIC20.91■□□□□ 0.94
SIX2Q9NPC8 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
SIX2Q9NPC8 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
SIX2Q9NPC8 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SIX2Q9NPC8 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC20.91■□□□□ 0.94
SIX2Q9NPC8 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC20.91■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms