Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
LIME1Q9H400 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIME1Q9H400 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
LIME1Q9H400 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC17.13■□□□□ 0.33
LIME1Q9H400 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIME1Q9H400 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
LIME1Q9H400 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIME1Q9H400 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIME1Q9H400 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC17.12■□□□□ 0.33
LIME1Q9H400 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC17.12■□□□□ 0.33
LIME1Q9H400 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
LIME1Q9H400 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC17.12■□□□□ 0.33
LIME1Q9H400 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIME1Q9H400 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC17.12■□□□□ 0.33
LIME1Q9H400 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIME1Q9H400 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC17.12■□□□□ 0.33
LIME1Q9H400 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC17.12■□□□□ 0.33
LIME1Q9H400 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC17.12■□□□□ 0.33
LIME1Q9H400 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC17.12■□□□□ 0.33
LIME1Q9H400 FITM1-202ENST00000559294 800 ntBASIC17.12■□□□□ 0.33
LIME1Q9H400 WWOX-216ENST00000569818 525 ntBASIC17.12■□□□□ 0.33
LIME1Q9H400 USF2-205ENST00000594064 1179 ntTSL 2 BASIC17.12■□□□□ 0.33
LIME1Q9H400 AC004264.1-201ENST00000608354 794 ntBASIC17.12■□□□□ 0.33
LIME1Q9H400 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC17.12■□□□□ 0.33
LIME1Q9H400 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIME1Q9H400 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
LIME1Q9H400 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC17.12■□□□□ 0.33
LIME1Q9H400 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LIME1Q9H400 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIME1Q9H400 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC17.12■□□□□ 0.33
LIME1Q9H400 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIME1Q9H400 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIME1Q9H400 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC17.12■□□□□ 0.33
LIME1Q9H400 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIME1Q9H400 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIME1Q9H400 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIME1Q9H400 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIME1Q9H400 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIME1Q9H400 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIME1Q9H400 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIME1Q9H400 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC17.11■□□□□ 0.33
LIME1Q9H400 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
LIME1Q9H400 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC17.11■□□□□ 0.33
LIME1Q9H400 AC010203.1-204ENST00000548782 407 ntBASIC17.11■□□□□ 0.33
LIME1Q9H400 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIME1Q9H400 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIME1Q9H400 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC17.11■□□□□ 0.33
LIME1Q9H400 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LIME1Q9H400 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIME1Q9H400 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC17.11■□□□□ 0.33
LIME1Q9H400 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LIME1Q9H400 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIME1Q9H400 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC17.11■□□□□ 0.33
LIME1Q9H400 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIME1Q9H400 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIME1Q9H400 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIME1Q9H400 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
LIME1Q9H400 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIME1Q9H400 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC17.1■□□□□ 0.33
LIME1Q9H400 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIME1Q9H400 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
LIME1Q9H400 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIME1Q9H400 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIME1Q9H400 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
LIME1Q9H400 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIME1Q9H400 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIME1Q9H400 AC023632.3-201ENST00000521633 145 ntBASIC17.1■□□□□ 0.33
LIME1Q9H400 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC17.1■□□□□ 0.33
LIME1Q9H400 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIME1Q9H400 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LIME1Q9H400 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIME1Q9H400 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIME1Q9H400 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIME1Q9H400 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIME1Q9H400 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIME1Q9H400 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIME1Q9H400 TCF3P1-201ENST00000423021 1937 ntBASIC17.09■□□□□ 0.33
LIME1Q9H400 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIME1Q9H400 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIME1Q9H400 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIME1Q9H400 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIME1Q9H400 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIME1Q9H400 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIME1Q9H400 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC17.09■□□□□ 0.33
LIME1Q9H400 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIME1Q9H400 AC116562.2-201ENST00000507042 360 ntBASIC17.09■□□□□ 0.33
LIME1Q9H400 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC17.09■□□□□ 0.33
LIME1Q9H400 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC17.09■□□□□ 0.33
LIME1Q9H400 AL121906.2-201ENST00000621597 723 ntBASIC17.09■□□□□ 0.33
LIME1Q9H400 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC17.09■□□□□ 0.33
LIME1Q9H400 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIME1Q9H400 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC17.09■□□□□ 0.33
LIME1Q9H400 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIME1Q9H400 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIME1Q9H400 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIME1Q9H400 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LIME1Q9H400 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIME1Q9H400 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LIME1Q9H400 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC17.09■□□□□ 0.33
LIME1Q9H400 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms