Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC42Q96M95 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC42Q96M95 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC42Q96M95 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC42Q96M95 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC42Q96M95 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC42Q96M95 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC21.02■□□□□ 0.96
CCDC42Q96M95 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC21.02■□□□□ 0.96
CCDC42Q96M95 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC42Q96M95 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC21.02■□□□□ 0.96
CCDC42Q96M95 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC42Q96M95 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC42Q96M95 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC42Q96M95 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
CCDC42Q96M95 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC42Q96M95 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC21.02■□□□□ 0.96
CCDC42Q96M95 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
CCDC42Q96M95 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC42Q96M95 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC42Q96M95 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC21.02■□□□□ 0.96
CCDC42Q96M95 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC42Q96M95 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
CCDC42Q96M95 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.95
CCDC42Q96M95 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC42Q96M95 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC42Q96M95 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC42Q96M95 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC42Q96M95 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC42Q96M95 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
CCDC42Q96M95 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC42Q96M95 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC21.01■□□□□ 0.95
CCDC42Q96M95 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC42Q96M95 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC42Q96M95 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC42Q96M95 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC42Q96M95 AL512625.2-201ENST00000417533 625 ntBASIC21.01■□□□□ 0.95
CCDC42Q96M95 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC42Q96M95 AC138932.1-201ENST00000534164 6830 ntBASIC21.01■□□□□ 0.95
CCDC42Q96M95 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC42Q96M95 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
CCDC42Q96M95 AC116351.2-201ENST00000606540 1585 ntBASIC21.01■□□□□ 0.95
CCDC42Q96M95 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
CCDC42Q96M95 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC21.01■□□□□ 0.95
CCDC42Q96M95 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC21.01■□□□□ 0.95
CCDC42Q96M95 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC42Q96M95 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC42Q96M95 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC42Q96M95 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC21.01■□□□□ 0.95
CCDC42Q96M95 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC21■□□□□ 0.95
CCDC42Q96M95 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC21■□□□□ 0.95
CCDC42Q96M95 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC42Q96M95 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC42Q96M95 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
CCDC42Q96M95 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC42Q96M95 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC21■□□□□ 0.95
CCDC42Q96M95 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
CCDC42Q96M95 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC21■□□□□ 0.95
CCDC42Q96M95 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC21■□□□□ 0.95
CCDC42Q96M95 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
CCDC42Q96M95 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC42Q96M95 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC21■□□□□ 0.95
CCDC42Q96M95 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC21■□□□□ 0.95
CCDC42Q96M95 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC21■□□□□ 0.95
CCDC42Q96M95 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC21■□□□□ 0.95
CCDC42Q96M95 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
CCDC42Q96M95 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
CCDC42Q96M95 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC21■□□□□ 0.95
CCDC42Q96M95 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC42Q96M95 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC20.99■□□□□ 0.95
CCDC42Q96M95 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC42Q96M95 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC42Q96M95 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC20.99■□□□□ 0.95
CCDC42Q96M95 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC42Q96M95 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC42Q96M95 MOK-233ENST00000524214 1539 ntTSL 2 BASIC20.99■□□□□ 0.95
CCDC42Q96M95 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC42Q96M95 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC42Q96M95 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC42Q96M95 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
CCDC42Q96M95 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC42Q96M95 AC093787.1-201ENST00000450396 207 ntBASIC20.99■□□□□ 0.95
CCDC42Q96M95 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC20.99■□□□□ 0.95
CCDC42Q96M95 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC20.99■□□□□ 0.95
CCDC42Q96M95 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC20.99■□□□□ 0.95
CCDC42Q96M95 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC20.99■□□□□ 0.95
CCDC42Q96M95 MDK-213ENST00000617138 635 ntTSL 2 BASIC20.99■□□□□ 0.95
CCDC42Q96M95 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC42Q96M95 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
CCDC42Q96M95 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC42Q96M95 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC42Q96M95 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC20.99■□□□□ 0.95
CCDC42Q96M95 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
CCDC42Q96M95 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC20.98■□□□□ 0.95
CCDC42Q96M95 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC42Q96M95 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC42Q96M95 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
CCDC42Q96M95 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC42Q96M95 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC42Q96M95 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC20.98■□□□□ 0.95
CCDC42Q96M95 AL161938.1-201ENST00000569833 2180 ntBASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms