Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
NKX2-3Q8TAU0 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
NKX2-3Q8TAU0 AC005521.1-201ENST00000393351 872 ntBASIC23.15■■□□□ 1.3
NKX2-3Q8TAU0 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
NKX2-3Q8TAU0 SAPCD2P4-201ENST00000424595 1171 ntBASIC23.15■■□□□ 1.3
NKX2-3Q8TAU0 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC23.15■■□□□ 1.3
NKX2-3Q8TAU0 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC23.15■■□□□ 1.3
NKX2-3Q8TAU0 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC23.15■■□□□ 1.3
NKX2-3Q8TAU0 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC23.15■■□□□ 1.3
NKX2-3Q8TAU0 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
NKX2-3Q8TAU0 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
NKX2-3Q8TAU0 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
NKX2-3Q8TAU0 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
NKX2-3Q8TAU0 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
NKX2-3Q8TAU0 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
NKX2-3Q8TAU0 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC23.15■■□□□ 1.3
NKX2-3Q8TAU0 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
NKX2-3Q8TAU0 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC23.14■■□□□ 1.3
NKX2-3Q8TAU0 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
NKX2-3Q8TAU0 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC23.14■■□□□ 1.3
NKX2-3Q8TAU0 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC23.14■■□□□ 1.3
NKX2-3Q8TAU0 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
NKX2-3Q8TAU0 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
NKX2-3Q8TAU0 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
NKX2-3Q8TAU0 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
NKX2-3Q8TAU0 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC23.14■■□□□ 1.29
NKX2-3Q8TAU0 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC23.14■■□□□ 1.29
NKX2-3Q8TAU0 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC23.14■■□□□ 1.29
NKX2-3Q8TAU0 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC23.14■■□□□ 1.29
NKX2-3Q8TAU0 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.29
NKX2-3Q8TAU0 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
NKX2-3Q8TAU0 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
NKX2-3Q8TAU0 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.29
NKX2-3Q8TAU0 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.29
NKX2-3Q8TAU0 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC23.13■■□□□ 1.29
NKX2-3Q8TAU0 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
NKX2-3Q8TAU0 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
NKX2-3Q8TAU0 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
NKX2-3Q8TAU0 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC23.13■■□□□ 1.29
NKX2-3Q8TAU0 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC23.13■■□□□ 1.29
NKX2-3Q8TAU0 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC23.13■■□□□ 1.29
NKX2-3Q8TAU0 KRT18P16-201ENST00000510337 1294 ntBASIC23.13■■□□□ 1.29
NKX2-3Q8TAU0 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC23.13■■□□□ 1.29
NKX2-3Q8TAU0 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC23.13■■□□□ 1.29
NKX2-3Q8TAU0 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC23.13■■□□□ 1.29
NKX2-3Q8TAU0 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
NKX2-3Q8TAU0 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
NKX2-3Q8TAU0 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
NKX2-3Q8TAU0 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
NKX2-3Q8TAU0 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC23.12■■□□□ 1.29
NKX2-3Q8TAU0 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
NKX2-3Q8TAU0 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
NKX2-3Q8TAU0 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC23.12■■□□□ 1.29
NKX2-3Q8TAU0 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC23.12■■□□□ 1.29
NKX2-3Q8TAU0 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
NKX2-3Q8TAU0 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
NKX2-3Q8TAU0 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC23.12■■□□□ 1.29
NKX2-3Q8TAU0 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC23.12■■□□□ 1.29
NKX2-3Q8TAU0 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC23.12■■□□□ 1.29
NKX2-3Q8TAU0 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC23.12■■□□□ 1.29
NKX2-3Q8TAU0 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC23.12■■□□□ 1.29
NKX2-3Q8TAU0 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC23.12■■□□□ 1.29
NKX2-3Q8TAU0 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC23.12■■□□□ 1.29
NKX2-3Q8TAU0 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC23.12■■□□□ 1.29
NKX2-3Q8TAU0 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
NKX2-3Q8TAU0 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC23.11■■□□□ 1.29
NKX2-3Q8TAU0 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC23.11■■□□□ 1.29
NKX2-3Q8TAU0 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC23.11■■□□□ 1.29
NKX2-3Q8TAU0 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
NKX2-3Q8TAU0 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
NKX2-3Q8TAU0 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
NKX2-3Q8TAU0 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
NKX2-3Q8TAU0 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC23.11■■□□□ 1.29
NKX2-3Q8TAU0 AC113347.1-201ENST00000413321 391 ntBASIC23.11■■□□□ 1.29
NKX2-3Q8TAU0 AL353807.1-201ENST00000427475 662 ntBASIC23.11■■□□□ 1.29
NKX2-3Q8TAU0 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC23.11■■□□□ 1.29
NKX2-3Q8TAU0 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC23.11■■□□□ 1.29
NKX2-3Q8TAU0 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
NKX2-3Q8TAU0 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC23.11■■□□□ 1.29
NKX2-3Q8TAU0 GRAP-204ENST00000573099 846 ntTSL 3 BASIC23.11■■□□□ 1.29
NKX2-3Q8TAU0 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC23.11■■□□□ 1.29
NKX2-3Q8TAU0 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC23.11■■□□□ 1.29
NKX2-3Q8TAU0 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC23.11■■□□□ 1.29
NKX2-3Q8TAU0 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC23.11■■□□□ 1.29
NKX2-3Q8TAU0 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
NKX2-3Q8TAU0 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
NKX2-3Q8TAU0 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
NKX2-3Q8TAU0 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC23.1■■□□□ 1.29
NKX2-3Q8TAU0 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
NKX2-3Q8TAU0 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
NKX2-3Q8TAU0 LINC01465-201ENST00000408887 1940 ntBASIC23.1■■□□□ 1.29
NKX2-3Q8TAU0 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
NKX2-3Q8TAU0 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
NKX2-3Q8TAU0 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC23.1■■□□□ 1.29
NKX2-3Q8TAU0 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
NKX2-3Q8TAU0 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC23.1■■□□□ 1.29
NKX2-3Q8TAU0 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC23.1■■□□□ 1.29
NKX2-3Q8TAU0 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC23.1■■□□□ 1.29
NKX2-3Q8TAU0 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
NKX2-3Q8TAU0 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC23.1■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms