Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC60Q8IWA6 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC60Q8IWA6 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC21.72■■□□□ 1.07
CCDC60Q8IWA6 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC21.72■■□□□ 1.07
CCDC60Q8IWA6 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC60Q8IWA6 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC21.72■■□□□ 1.07
CCDC60Q8IWA6 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC21.72■■□□□ 1.07
CCDC60Q8IWA6 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC60Q8IWA6 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC60Q8IWA6 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC60Q8IWA6 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC60Q8IWA6 PTPA-216ENST00000432651 857 ntTSL 2 BASIC21.72■■□□□ 1.07
CCDC60Q8IWA6 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC21.72■■□□□ 1.07
CCDC60Q8IWA6 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC21.72■■□□□ 1.07
CCDC60Q8IWA6 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC21.72■■□□□ 1.07
CCDC60Q8IWA6 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC21.72■■□□□ 1.07
CCDC60Q8IWA6 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC60Q8IWA6 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC60Q8IWA6 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC21.72■■□□□ 1.07
CCDC60Q8IWA6 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC21.72■■□□□ 1.07
CCDC60Q8IWA6 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC60Q8IWA6 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC60Q8IWA6 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC21.72■■□□□ 1.07
CCDC60Q8IWA6 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC60Q8IWA6 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC60Q8IWA6 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC60Q8IWA6 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC60Q8IWA6 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
CCDC60Q8IWA6 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC21.71■■□□□ 1.07
CCDC60Q8IWA6 CYP2D8P-201ENST00000433633 1490 ntBASIC21.71■■□□□ 1.07
CCDC60Q8IWA6 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC60Q8IWA6 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC21.71■■□□□ 1.07
CCDC60Q8IWA6 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC60Q8IWA6 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC60Q8IWA6 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC60Q8IWA6 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC60Q8IWA6 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC60Q8IWA6 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC60Q8IWA6 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC21.71■■□□□ 1.07
CCDC60Q8IWA6 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC60Q8IWA6 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC60Q8IWA6 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC21.71■■□□□ 1.07
CCDC60Q8IWA6 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
CCDC60Q8IWA6 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC21.71■■□□□ 1.07
CCDC60Q8IWA6 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC60Q8IWA6 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC60Q8IWA6 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
CCDC60Q8IWA6 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC21.71■■□□□ 1.07
CCDC60Q8IWA6 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC60Q8IWA6 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC60Q8IWA6 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC60Q8IWA6 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC60Q8IWA6 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC21.7■■□□□ 1.07
CCDC60Q8IWA6 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC21.7■■□□□ 1.07
CCDC60Q8IWA6 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
CCDC60Q8IWA6 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC60Q8IWA6 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC60Q8IWA6 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC21.7■■□□□ 1.06
CCDC60Q8IWA6 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC60Q8IWA6 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC21.7■■□□□ 1.06
CCDC60Q8IWA6 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC21.7■■□□□ 1.06
CCDC60Q8IWA6 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC60Q8IWA6 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC21.7■■□□□ 1.06
CCDC60Q8IWA6 DGCR10-201ENST00000609839 495 ntBASIC21.7■■□□□ 1.06
CCDC60Q8IWA6 AC011298.2-201ENST00000617989 482 ntBASIC21.7■■□□□ 1.06
CCDC60Q8IWA6 AC130371.2-201ENST00000619443 611 ntBASIC21.7■■□□□ 1.06
CCDC60Q8IWA6 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC21.7■■□□□ 1.06
CCDC60Q8IWA6 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC60Q8IWA6 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
CCDC60Q8IWA6 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC21.7■■□□□ 1.06
CCDC60Q8IWA6 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC60Q8IWA6 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC60Q8IWA6 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC60Q8IWA6 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC60Q8IWA6 PRR31-201ENST00000371629 978 ntTSL 2 BASIC21.69■■□□□ 1.06
CCDC60Q8IWA6 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC60Q8IWA6 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC21.69■■□□□ 1.06
CCDC60Q8IWA6 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC21.69■■□□□ 1.06
CCDC60Q8IWA6 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC21.69■■□□□ 1.06
CCDC60Q8IWA6 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC21.69■■□□□ 1.06
CCDC60Q8IWA6 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC60Q8IWA6 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC21.69■■□□□ 1.06
CCDC60Q8IWA6 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
CCDC60Q8IWA6 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC21.69■■□□□ 1.06
CCDC60Q8IWA6 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC21.69■■□□□ 1.06
CCDC60Q8IWA6 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC60Q8IWA6 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC60Q8IWA6 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC21.69■■□□□ 1.06
CCDC60Q8IWA6 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC60Q8IWA6 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC60Q8IWA6 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC21.69■■□□□ 1.06
CCDC60Q8IWA6 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
CCDC60Q8IWA6 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC60Q8IWA6 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC60Q8IWA6 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC21.69■■□□□ 1.06
CCDC60Q8IWA6 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC60Q8IWA6 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC21.68■■□□□ 1.06
CCDC60Q8IWA6 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC60Q8IWA6 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC60Q8IWA6 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 67.6 ms