Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PPP4R4Q6NUP7 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC18.65■□□□□ 0.58
PPP4R4Q6NUP7 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PPP4R4Q6NUP7 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC18.65■□□□□ 0.58
PPP4R4Q6NUP7 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PPP4R4Q6NUP7 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC18.65■□□□□ 0.58
PPP4R4Q6NUP7 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC18.65■□□□□ 0.58
PPP4R4Q6NUP7 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC18.65■□□□□ 0.58
PPP4R4Q6NUP7 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
PPP4R4Q6NUP7 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PPP4R4Q6NUP7 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PPP4R4Q6NUP7 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PPP4R4Q6NUP7 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.65■□□□□ 0.58
PPP4R4Q6NUP7 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.65■□□□□ 0.58
PPP4R4Q6NUP7 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC18.65■□□□□ 0.58
PPP4R4Q6NUP7 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC18.65■□□□□ 0.58
PPP4R4Q6NUP7 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PPP4R4Q6NUP7 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PPP4R4Q6NUP7 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC18.65■□□□□ 0.58
PPP4R4Q6NUP7 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC18.65■□□□□ 0.58
PPP4R4Q6NUP7 RBM17P2-201ENST00000616397 1405 ntBASIC18.65■□□□□ 0.58
PPP4R4Q6NUP7 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC18.65■□□□□ 0.58
PPP4R4Q6NUP7 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PPP4R4Q6NUP7 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PPP4R4Q6NUP7 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.64■□□□□ 0.58
PPP4R4Q6NUP7 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.58
PPP4R4Q6NUP7 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
PPP4R4Q6NUP7 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
PPP4R4Q6NUP7 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
PPP4R4Q6NUP7 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
PPP4R4Q6NUP7 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
PPP4R4Q6NUP7 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC18.64■□□□□ 0.57
PPP4R4Q6NUP7 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PPP4R4Q6NUP7 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC18.64■□□□□ 0.57
PPP4R4Q6NUP7 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PPP4R4Q6NUP7 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PPP4R4Q6NUP7 HLA-L-209ENST00000420110 1011 ntBASIC18.64■□□□□ 0.57
PPP4R4Q6NUP7 CNN2P6-201ENST00000439038 900 ntBASIC18.64■□□□□ 0.57
PPP4R4Q6NUP7 RAP2CP1-201ENST00000605103 478 ntBASIC18.64■□□□□ 0.57
PPP4R4Q6NUP7 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC18.64■□□□□ 0.57
PPP4R4Q6NUP7 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PPP4R4Q6NUP7 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PPP4R4Q6NUP7 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
PPP4R4Q6NUP7 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
PPP4R4Q6NUP7 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PPP4R4Q6NUP7 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PPP4R4Q6NUP7 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.64■□□□□ 0.57
PPP4R4Q6NUP7 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
PPP4R4Q6NUP7 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
PPP4R4Q6NUP7 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
PPP4R4Q6NUP7 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
PPP4R4Q6NUP7 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.63■□□□□ 0.57
PPP4R4Q6NUP7 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
PPP4R4Q6NUP7 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PPP4R4Q6NUP7 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC18.63■□□□□ 0.57
PPP4R4Q6NUP7 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
PPP4R4Q6NUP7 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PPP4R4Q6NUP7 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
PPP4R4Q6NUP7 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PPP4R4Q6NUP7 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
PPP4R4Q6NUP7 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PPP4R4Q6NUP7 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PPP4R4Q6NUP7 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PPP4R4Q6NUP7 TP73-202ENST00000354437 2140 ntTSL 5 BASIC18.63■□□□□ 0.57
PPP4R4Q6NUP7 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PPP4R4Q6NUP7 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC18.63■□□□□ 0.57
PPP4R4Q6NUP7 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
PPP4R4Q6NUP7 BET1L-204ENST00000410108 637 ntTSL 3 BASIC18.63■□□□□ 0.57
PPP4R4Q6NUP7 CYP2T1P-201ENST00000432607 1285 ntBASIC18.63■□□□□ 0.57
PPP4R4Q6NUP7 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
PPP4R4Q6NUP7 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
PPP4R4Q6NUP7 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
PPP4R4Q6NUP7 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC18.63■□□□□ 0.57
PPP4R4Q6NUP7 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PPP4R4Q6NUP7 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
PPP4R4Q6NUP7 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PPP4R4Q6NUP7 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PPP4R4Q6NUP7 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC18.63■□□□□ 0.57
PPP4R4Q6NUP7 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PPP4R4Q6NUP7 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PPP4R4Q6NUP7 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PPP4R4Q6NUP7 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
PPP4R4Q6NUP7 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.63■□□□□ 0.57
PPP4R4Q6NUP7 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC18.62■□□□□ 0.57
PPP4R4Q6NUP7 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC18.62■□□□□ 0.57
PPP4R4Q6NUP7 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC18.62■□□□□ 0.57
PPP4R4Q6NUP7 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PPP4R4Q6NUP7 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
PPP4R4Q6NUP7 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PPP4R4Q6NUP7 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC18.62■□□□□ 0.57
PPP4R4Q6NUP7 ID1-201ENST00000376105 1233 ntBASIC18.62■□□□□ 0.57
PPP4R4Q6NUP7 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC18.62■□□□□ 0.57
PPP4R4Q6NUP7 UQCRFS1P1-201ENST00000435169 820 ntBASIC18.62■□□□□ 0.57
PPP4R4Q6NUP7 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
PPP4R4Q6NUP7 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC18.62■□□□□ 0.57
PPP4R4Q6NUP7 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC18.62■□□□□ 0.57
PPP4R4Q6NUP7 AC079598.2-202ENST00000546624 1451 ntBASIC18.62■□□□□ 0.57
PPP4R4Q6NUP7 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PPP4R4Q6NUP7 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PPP4R4Q6NUP7 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms