Protein–RNA interactions for Protein: Q68DV7

RNF43, E3 ubiquitin-protein ligase RNF43, humanhuman

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43Q68DV7 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC20.45■□□□□ 0.86
RNF43Q68DV7 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC20.45■□□□□ 0.86
RNF43Q68DV7 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC20.45■□□□□ 0.86
RNF43Q68DV7 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC20.45■□□□□ 0.86
RNF43Q68DV7 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC20.45■□□□□ 0.86
RNF43Q68DV7 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC20.45■□□□□ 0.86
RNF43Q68DV7 AL121906.2-201ENST00000621597 723 ntBASIC20.45■□□□□ 0.86
RNF43Q68DV7 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC20.45■□□□□ 0.86
RNF43Q68DV7 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC20.45■□□□□ 0.86
RNF43Q68DV7 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC20.45■□□□□ 0.86
RNF43Q68DV7 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RNF43Q68DV7 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
RNF43Q68DV7 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RNF43Q68DV7 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC20.44■□□□□ 0.86
RNF43Q68DV7 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RNF43Q68DV7 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
RNF43Q68DV7 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC20.44■□□□□ 0.86
RNF43Q68DV7 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
RNF43Q68DV7 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC20.44■□□□□ 0.86
RNF43Q68DV7 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RNF43Q68DV7 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
RNF43Q68DV7 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
RNF43Q68DV7 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RNF43Q68DV7 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RNF43Q68DV7 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC20.44■□□□□ 0.86
RNF43Q68DV7 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC20.44■□□□□ 0.86
RNF43Q68DV7 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC20.44■□□□□ 0.86
RNF43Q68DV7 REXO2-216ENST00000544196 452 ntTSL 3 BASIC20.44■□□□□ 0.86
RNF43Q68DV7 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC20.44■□□□□ 0.86
RNF43Q68DV7 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC20.44■□□□□ 0.86
RNF43Q68DV7 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.44■□□□□ 0.86
RNF43Q68DV7 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC20.44■□□□□ 0.86
RNF43Q68DV7 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RNF43Q68DV7 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC20.44■□□□□ 0.86
RNF43Q68DV7 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RNF43Q68DV7 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC20.43■□□□□ 0.86
RNF43Q68DV7 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RNF43Q68DV7 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC20.43■□□□□ 0.86
RNF43Q68DV7 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF43Q68DV7 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RNF43Q68DV7 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
RNF43Q68DV7 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
RNF43Q68DV7 KRASP1-201ENST00000407852 552 ntBASIC20.43■□□□□ 0.86
RNF43Q68DV7 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC20.43■□□□□ 0.86
RNF43Q68DV7 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
RNF43Q68DV7 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RNF43Q68DV7 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF43Q68DV7 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC20.43■□□□□ 0.86
RNF43Q68DV7 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF43Q68DV7 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF43Q68DV7 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
RNF43Q68DV7 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC20.43■□□□□ 0.86
RNF43Q68DV7 AP001412.1-201ENST00000608405 714 ntBASIC20.43■□□□□ 0.86
RNF43Q68DV7 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RNF43Q68DV7 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF43Q68DV7 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC20.43■□□□□ 0.86
RNF43Q68DV7 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC20.43■□□□□ 0.86
RNF43Q68DV7 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF43Q68DV7 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC20.43■□□□□ 0.86
RNF43Q68DV7 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC20.43■□□□□ 0.86
RNF43Q68DV7 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RNF43Q68DV7 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF43Q68DV7 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC20.42■□□□□ 0.86
RNF43Q68DV7 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.42■□□□□ 0.86
RNF43Q68DV7 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF43Q68DV7 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC20.42■□□□□ 0.86
RNF43Q68DV7 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF43Q68DV7 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF43Q68DV7 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF43Q68DV7 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF43Q68DV7 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC20.42■□□□□ 0.86
RNF43Q68DV7 AC087499.1-201ENST00000418141 1075 ntBASIC20.42■□□□□ 0.86
RNF43Q68DV7 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC20.42■□□□□ 0.86
RNF43Q68DV7 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC20.42■□□□□ 0.86
RNF43Q68DV7 DHDH-203ENST00000522614 776 ntTSL 5 BASIC20.42■□□□□ 0.86
RNF43Q68DV7 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC20.42■□□□□ 0.86
RNF43Q68DV7 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
RNF43Q68DV7 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF43Q68DV7 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF43Q68DV7 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF43Q68DV7 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF43Q68DV7 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF43Q68DV7 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF43Q68DV7 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RNF43Q68DV7 TCF3P1-201ENST00000423021 1937 ntBASIC20.41■□□□□ 0.86
RNF43Q68DV7 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF43Q68DV7 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RNF43Q68DV7 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RNF43Q68DV7 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF43Q68DV7 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF43Q68DV7 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC20.41■□□□□ 0.86
RNF43Q68DV7 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC20.41■□□□□ 0.86
RNF43Q68DV7 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC20.41■□□□□ 0.86
RNF43Q68DV7 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC20.41■□□□□ 0.86
RNF43Q68DV7 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF43Q68DV7 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RNF43Q68DV7 MIR4785-201ENST00000585005 73 ntBASIC20.41■□□□□ 0.86
RNF43Q68DV7 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC20.41■□□□□ 0.86
RNF43Q68DV7 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF43Q68DV7 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms