Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC58Q4VC31 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC58Q4VC31 JTB-203ENST00000368589 1216 ntTSL 2 BASIC17.39■□□□□ 0.37
CCDC58Q4VC31 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC17.39■□□□□ 0.37
CCDC58Q4VC31 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC17.39■□□□□ 0.37
CCDC58Q4VC31 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC17.39■□□□□ 0.37
CCDC58Q4VC31 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC17.39■□□□□ 0.37
CCDC58Q4VC31 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC17.39■□□□□ 0.37
CCDC58Q4VC31 UBE2DNL-204ENST00000602536 740 ntBASIC17.39■□□□□ 0.37
CCDC58Q4VC31 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC17.39■□□□□ 0.37
CCDC58Q4VC31 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.39■□□□□ 0.37
CCDC58Q4VC31 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC58Q4VC31 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC58Q4VC31 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC58Q4VC31 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC58Q4VC31 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC58Q4VC31 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC58Q4VC31 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC58Q4VC31 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC58Q4VC31 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
CCDC58Q4VC31 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC58Q4VC31 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC58Q4VC31 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.39■□□□□ 0.37
CCDC58Q4VC31 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC58Q4VC31 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC17.38■□□□□ 0.37
CCDC58Q4VC31 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC17.38■□□□□ 0.37
CCDC58Q4VC31 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC58Q4VC31 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
CCDC58Q4VC31 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC17.38■□□□□ 0.37
CCDC58Q4VC31 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC58Q4VC31 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC58Q4VC31 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC58Q4VC31 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC58Q4VC31 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
CCDC58Q4VC31 TERF1P5-201ENST00000477545 1207 ntBASIC17.38■□□□□ 0.37
CCDC58Q4VC31 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
CCDC58Q4VC31 RAB43-208ENST00000615093 783 ntTSL 5 BASIC17.38■□□□□ 0.37
CCDC58Q4VC31 AC100791.3-201ENST00000617619 330 ntBASIC17.38■□□□□ 0.37
CCDC58Q4VC31 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC17.38■□□□□ 0.37
CCDC58Q4VC31 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC58Q4VC31 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC58Q4VC31 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC58Q4VC31 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC58Q4VC31 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
CCDC58Q4VC31 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC58Q4VC31 GAS2L1P2-201ENST00000436355 1356 ntBASIC17.38■□□□□ 0.37
CCDC58Q4VC31 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC58Q4VC31 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC58Q4VC31 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC17.38■□□□□ 0.37
CCDC58Q4VC31 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC58Q4VC31 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC58Q4VC31 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
CCDC58Q4VC31 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC17.37■□□□□ 0.37
CCDC58Q4VC31 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
CCDC58Q4VC31 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC58Q4VC31 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC17.37■□□□□ 0.37
CCDC58Q4VC31 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
CCDC58Q4VC31 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC58Q4VC31 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
CCDC58Q4VC31 AC099398.1-201ENST00000567919 2776 ntBASIC17.37■□□□□ 0.37
CCDC58Q4VC31 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC58Q4VC31 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC58Q4VC31 HLA-G-202ENST00000376815 851 ntBASIC17.37■□□□□ 0.37
CCDC58Q4VC31 HLA-G-203ENST00000376818 1127 ntBASIC17.37■□□□□ 0.37
CCDC58Q4VC31 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC58Q4VC31 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC17.37■□□□□ 0.37
CCDC58Q4VC31 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC58Q4VC31 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
CCDC58Q4VC31 AC005837.3-201ENST00000612163 286 ntBASIC17.37■□□□□ 0.37
CCDC58Q4VC31 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
CCDC58Q4VC31 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC58Q4VC31 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
CCDC58Q4VC31 AL138781.2-201ENST00000617896 1843 ntBASIC17.37■□□□□ 0.37
CCDC58Q4VC31 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC58Q4VC31 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC58Q4VC31 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC58Q4VC31 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC58Q4VC31 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC17.37■□□□□ 0.37
CCDC58Q4VC31 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC58Q4VC31 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC17.37■□□□□ 0.37
CCDC58Q4VC31 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC58Q4VC31 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC58Q4VC31 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC58Q4VC31 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC58Q4VC31 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC58Q4VC31 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC58Q4VC31 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC58Q4VC31 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC17.36■□□□□ 0.37
CCDC58Q4VC31 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC58Q4VC31 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC58Q4VC31 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
CCDC58Q4VC31 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
CCDC58Q4VC31 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC58Q4VC31 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC58Q4VC31 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC58Q4VC31 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC17.36■□□□□ 0.37
CCDC58Q4VC31 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
CCDC58Q4VC31 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC58Q4VC31 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC17.36■□□□□ 0.37
CCDC58Q4VC31 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 72.6 ms