Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC23.97■■□□□ 1.43
CCDC88AQ3V6T2 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
CCDC88AQ3V6T2 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
CCDC88AQ3V6T2 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC23.97■■□□□ 1.43
CCDC88AQ3V6T2 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC23.97■■□□□ 1.43
CCDC88AQ3V6T2 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC23.97■■□□□ 1.43
CCDC88AQ3V6T2 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC23.97■■□□□ 1.43
CCDC88AQ3V6T2 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
CCDC88AQ3V6T2 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
CCDC88AQ3V6T2 PALM-208ENST00000592155 2272 ntTSL 4 BASIC23.97■■□□□ 1.43
CCDC88AQ3V6T2 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
CCDC88AQ3V6T2 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
CCDC88AQ3V6T2 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
CCDC88AQ3V6T2 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC23.96■■□□□ 1.43
CCDC88AQ3V6T2 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC23.96■■□□□ 1.43
CCDC88AQ3V6T2 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CCDC88AQ3V6T2 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CCDC88AQ3V6T2 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC23.96■■□□□ 1.43
CCDC88AQ3V6T2 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC23.96■■□□□ 1.43
CCDC88AQ3V6T2 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CCDC88AQ3V6T2 FDX1P1-201ENST00000449115 551 ntBASIC23.96■■□□□ 1.43
CCDC88AQ3V6T2 AP003041.3-201ENST00000527151 707 ntBASIC23.96■■□□□ 1.43
CCDC88AQ3V6T2 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC23.96■■□□□ 1.43
CCDC88AQ3V6T2 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC23.96■■□□□ 1.43
CCDC88AQ3V6T2 IFNL4P1-201ENST00000607083 540 ntBASIC23.96■■□□□ 1.43
CCDC88AQ3V6T2 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CCDC88AQ3V6T2 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC23.96■■□□□ 1.43
CCDC88AQ3V6T2 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CCDC88AQ3V6T2 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CCDC88AQ3V6T2 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CCDC88AQ3V6T2 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CCDC88AQ3V6T2 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
CCDC88AQ3V6T2 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CCDC88AQ3V6T2 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
CCDC88AQ3V6T2 PTPA-216ENST00000432651 857 ntTSL 2 BASIC23.96■■□□□ 1.43
CCDC88AQ3V6T2 CNP-204ENST00000472031 1019 ntTSL 2 BASIC23.96■■□□□ 1.43
CCDC88AQ3V6T2 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
CCDC88AQ3V6T2 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC23.96■■□□□ 1.43
CCDC88AQ3V6T2 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC23.95■■□□□ 1.43
CCDC88AQ3V6T2 AC018553.1-201ENST00000616682 1458 ntBASIC23.95■■□□□ 1.42
CCDC88AQ3V6T2 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC23.95■■□□□ 1.42
CCDC88AQ3V6T2 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC23.95■■□□□ 1.42
CCDC88AQ3V6T2 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
CCDC88AQ3V6T2 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC23.95■■□□□ 1.42
CCDC88AQ3V6T2 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC23.95■■□□□ 1.42
CCDC88AQ3V6T2 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC23.95■■□□□ 1.42
CCDC88AQ3V6T2 LY6E-213ENST00000522528 606 ntTSL 3 BASIC23.95■■□□□ 1.42
CCDC88AQ3V6T2 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC23.95■■□□□ 1.42
CCDC88AQ3V6T2 NPAP1P7-201ENST00000613027 823 ntBASIC23.95■■□□□ 1.42
CCDC88AQ3V6T2 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
CCDC88AQ3V6T2 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC23.95■■□□□ 1.42
CCDC88AQ3V6T2 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
CCDC88AQ3V6T2 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
CCDC88AQ3V6T2 TFP1-202ENST00000475455 1573 ntBASIC23.95■■□□□ 1.42
CCDC88AQ3V6T2 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC23.95■■□□□ 1.42
CCDC88AQ3V6T2 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
CCDC88AQ3V6T2 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC23.94■■□□□ 1.42
CCDC88AQ3V6T2 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC23.94■■□□□ 1.42
CCDC88AQ3V6T2 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
CCDC88AQ3V6T2 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC23.94■■□□□ 1.42
CCDC88AQ3V6T2 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC23.94■■□□□ 1.42
CCDC88AQ3V6T2 AC004263.2-201ENST00000617183 678 ntBASIC23.94■■□□□ 1.42
CCDC88AQ3V6T2 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC23.94■■□□□ 1.42
CCDC88AQ3V6T2 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
CCDC88AQ3V6T2 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
CCDC88AQ3V6T2 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
CCDC88AQ3V6T2 PHGDH-210ENST00000641115 1638 ntBASIC23.94■■□□□ 1.42
CCDC88AQ3V6T2 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC23.94■■□□□ 1.42
CCDC88AQ3V6T2 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
CCDC88AQ3V6T2 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
CCDC88AQ3V6T2 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
CCDC88AQ3V6T2 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
CCDC88AQ3V6T2 HOMER2P1-201ENST00000455653 964 ntBASIC23.94■■□□□ 1.42
CCDC88AQ3V6T2 PTK2-216ENST00000519881 863 ntTSL 3 BASIC23.94■■□□□ 1.42
CCDC88AQ3V6T2 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
CCDC88AQ3V6T2 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
CCDC88AQ3V6T2 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC23.93■■□□□ 1.42
CCDC88AQ3V6T2 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC23.93■■□□□ 1.42
CCDC88AQ3V6T2 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
CCDC88AQ3V6T2 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC23.93■■□□□ 1.42
CCDC88AQ3V6T2 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC23.93■■□□□ 1.42
CCDC88AQ3V6T2 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
CCDC88AQ3V6T2 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
CCDC88AQ3V6T2 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC23.93■■□□□ 1.42
CCDC88AQ3V6T2 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC23.93■■□□□ 1.42
CCDC88AQ3V6T2 STK25-204ENST00000405585 1643 ntTSL 2 BASIC23.93■■□□□ 1.42
CCDC88AQ3V6T2 DERL1-203ENST00000419562 918 ntTSL 2 BASIC23.93■■□□□ 1.42
CCDC88AQ3V6T2 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC23.93■■□□□ 1.42
CCDC88AQ3V6T2 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC23.93■■□□□ 1.42
CCDC88AQ3V6T2 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC23.93■■□□□ 1.42
CCDC88AQ3V6T2 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC23.93■■□□□ 1.42
CCDC88AQ3V6T2 AC111152.3-201ENST00000569699 673 ntBASIC23.93■■□□□ 1.42
CCDC88AQ3V6T2 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
CCDC88AQ3V6T2 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC23.93■■□□□ 1.42
CCDC88AQ3V6T2 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
CCDC88AQ3V6T2 BX119927.1-201ENST00000636596 1552 ntBASIC23.93■■□□□ 1.42
CCDC88AQ3V6T2 HLA-A-209ENST00000638375 975 ntBASIC23.93■■□□□ 1.42
CCDC88AQ3V6T2 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC23.93■■□□□ 1.42
CCDC88AQ3V6T2 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC23.92■■□□□ 1.42
CCDC88AQ3V6T2 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms