Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
CCDC144BQ3MJ40 AL158211.5-201ENST00000623583 2518 ntBASIC22.66■■□□□ 1.22
CCDC144BQ3MJ40 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
CCDC144BQ3MJ40 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
CCDC144BQ3MJ40 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
CCDC144BQ3MJ40 FAM197Y1-201ENST00000421178 764 ntBASIC22.66■■□□□ 1.22
CCDC144BQ3MJ40 AL353807.1-201ENST00000427475 662 ntBASIC22.66■■□□□ 1.22
CCDC144BQ3MJ40 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
CCDC144BQ3MJ40 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC22.66■■□□□ 1.22
CCDC144BQ3MJ40 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
CCDC144BQ3MJ40 PNN-205ENST00000556530 601 ntTSL 2 BASIC22.66■■□□□ 1.22
CCDC144BQ3MJ40 AL121906.2-201ENST00000621597 723 ntBASIC22.66■■□□□ 1.22
CCDC144BQ3MJ40 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC22.66■■□□□ 1.22
CCDC144BQ3MJ40 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
CCDC144BQ3MJ40 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
CCDC144BQ3MJ40 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC22.66■■□□□ 1.22
CCDC144BQ3MJ40 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
CCDC144BQ3MJ40 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC22.66■■□□□ 1.22
CCDC144BQ3MJ40 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
CCDC144BQ3MJ40 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC22.66■■□□□ 1.22
CCDC144BQ3MJ40 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC22.66■■□□□ 1.22
CCDC144BQ3MJ40 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CCDC144BQ3MJ40 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CCDC144BQ3MJ40 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
CCDC144BQ3MJ40 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC22.65■■□□□ 1.22
CCDC144BQ3MJ40 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC22.65■■□□□ 1.22
CCDC144BQ3MJ40 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CCDC144BQ3MJ40 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC22.65■■□□□ 1.22
CCDC144BQ3MJ40 PPOX-219ENST00000544598 813 ntTSL 2 BASIC22.65■■□□□ 1.22
CCDC144BQ3MJ40 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC22.65■■□□□ 1.22
CCDC144BQ3MJ40 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC22.65■■□□□ 1.22
CCDC144BQ3MJ40 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC22.65■■□□□ 1.22
CCDC144BQ3MJ40 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC22.65■■□□□ 1.22
CCDC144BQ3MJ40 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CCDC144BQ3MJ40 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
CCDC144BQ3MJ40 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CCDC144BQ3MJ40 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC22.65■■□□□ 1.22
CCDC144BQ3MJ40 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC22.65■■□□□ 1.22
CCDC144BQ3MJ40 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
CCDC144BQ3MJ40 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC22.65■■□□□ 1.22
CCDC144BQ3MJ40 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
CCDC144BQ3MJ40 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC22.64■■□□□ 1.22
CCDC144BQ3MJ40 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.22
CCDC144BQ3MJ40 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC22.64■■□□□ 1.21
CCDC144BQ3MJ40 TREX2-204ENST00000370212 861 ntTSL 5 BASIC22.64■■□□□ 1.21
CCDC144BQ3MJ40 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.21
CCDC144BQ3MJ40 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.21
CCDC144BQ3MJ40 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
CCDC144BQ3MJ40 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
CCDC144BQ3MJ40 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
CCDC144BQ3MJ40 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
CCDC144BQ3MJ40 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
CCDC144BQ3MJ40 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
CCDC144BQ3MJ40 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC22.64■■□□□ 1.21
CCDC144BQ3MJ40 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
CCDC144BQ3MJ40 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
CCDC144BQ3MJ40 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
CCDC144BQ3MJ40 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC22.63■■□□□ 1.21
CCDC144BQ3MJ40 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
CCDC144BQ3MJ40 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC22.63■■□□□ 1.21
CCDC144BQ3MJ40 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
CCDC144BQ3MJ40 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
CCDC144BQ3MJ40 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
CCDC144BQ3MJ40 FDX2-207ENST00000494368 584 ntTSL 4 BASIC22.63■■□□□ 1.21
CCDC144BQ3MJ40 TK2-213ENST00000563369 882 ntTSL 5 BASIC22.63■■□□□ 1.21
CCDC144BQ3MJ40 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC22.63■■□□□ 1.21
CCDC144BQ3MJ40 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC22.63■■□□□ 1.21
CCDC144BQ3MJ40 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
CCDC144BQ3MJ40 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC22.63■■□□□ 1.21
CCDC144BQ3MJ40 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
CCDC144BQ3MJ40 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC22.63■■□□□ 1.21
CCDC144BQ3MJ40 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC22.63■■□□□ 1.21
CCDC144BQ3MJ40 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC22.63■■□□□ 1.21
CCDC144BQ3MJ40 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC22.63■■□□□ 1.21
CCDC144BQ3MJ40 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
CCDC144BQ3MJ40 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC22.63■■□□□ 1.21
CCDC144BQ3MJ40 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
CCDC144BQ3MJ40 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC22.63■■□□□ 1.21
CCDC144BQ3MJ40 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC22.63■■□□□ 1.21
CCDC144BQ3MJ40 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CCDC144BQ3MJ40 SRI-203ENST00000419179 1307 ntTSL 2 BASIC22.62■■□□□ 1.21
CCDC144BQ3MJ40 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
CCDC144BQ3MJ40 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
CCDC144BQ3MJ40 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
CCDC144BQ3MJ40 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC22.62■■□□□ 1.21
CCDC144BQ3MJ40 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CCDC144BQ3MJ40 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CCDC144BQ3MJ40 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CCDC144BQ3MJ40 MMP23A-201ENST00000234610 1017 ntBASIC22.62■■□□□ 1.21
CCDC144BQ3MJ40 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC22.62■■□□□ 1.21
CCDC144BQ3MJ40 AC073195.1-201ENST00000607241 877 ntBASIC22.62■■□□□ 1.21
CCDC144BQ3MJ40 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC22.62■■□□□ 1.21
CCDC144BQ3MJ40 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC22.62■■□□□ 1.21
CCDC144BQ3MJ40 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC22.62■■□□□ 1.21
CCDC144BQ3MJ40 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC22.62■■□□□ 1.21
CCDC144BQ3MJ40 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC22.62■■□□□ 1.21
CCDC144BQ3MJ40 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC22.62■■□□□ 1.21
CCDC144BQ3MJ40 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC22.62■■□□□ 1.21
CCDC144BQ3MJ40 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CCDC144BQ3MJ40 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms