Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC124283.5-201ENST00000624661 1809 ntBASIC18.74■□□□□ 0.59
COL28A1Q2UY09 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC18.74■□□□□ 0.59
COL28A1Q2UY09 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC18.74■□□□□ 0.59
COL28A1Q2UY09 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL28A1Q2UY09 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL28A1Q2UY09 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL28A1Q2UY09 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL28A1Q2UY09 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC18.74■□□□□ 0.59
COL28A1Q2UY09 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL28A1Q2UY09 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL28A1Q2UY09 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC18.74■□□□□ 0.59
COL28A1Q2UY09 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL28A1Q2UY09 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC18.74■□□□□ 0.59
COL28A1Q2UY09 TSPY14P-201ENST00000303979 915 ntBASIC18.74■□□□□ 0.59
COL28A1Q2UY09 PGM5P4-201ENST00000421970 445 ntBASIC18.74■□□□□ 0.59
COL28A1Q2UY09 FAM207BP-201ENST00000447172 505 ntBASIC18.74■□□□□ 0.59
COL28A1Q2UY09 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL28A1Q2UY09 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC18.74■□□□□ 0.59
COL28A1Q2UY09 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC18.74■□□□□ 0.59
COL28A1Q2UY09 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC18.74■□□□□ 0.59
COL28A1Q2UY09 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL28A1Q2UY09 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL28A1Q2UY09 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL28A1Q2UY09 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL28A1Q2UY09 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL28A1Q2UY09 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC18.74■□□□□ 0.59
COL28A1Q2UY09 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL28A1Q2UY09 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL28A1Q2UY09 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL28A1Q2UY09 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL28A1Q2UY09 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL28A1Q2UY09 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
COL28A1Q2UY09 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL28A1Q2UY09 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL28A1Q2UY09 FAM86EP-206ENST00000510506 987 ntBASIC18.73■□□□□ 0.59
COL28A1Q2UY09 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC18.73■□□□□ 0.59
COL28A1Q2UY09 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC18.73■□□□□ 0.59
COL28A1Q2UY09 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL28A1Q2UY09 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC18.73■□□□□ 0.59
COL28A1Q2UY09 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL28A1Q2UY09 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
COL28A1Q2UY09 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL28A1Q2UY09 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL28A1Q2UY09 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC18.73■□□□□ 0.59
COL28A1Q2UY09 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
COL28A1Q2UY09 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL28A1Q2UY09 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL28A1Q2UY09 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL28A1Q2UY09 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL28A1Q2UY09 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC18.72■□□□□ 0.59
COL28A1Q2UY09 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC18.72■□□□□ 0.59
COL28A1Q2UY09 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC18.72■□□□□ 0.59
COL28A1Q2UY09 NIFKP9-201ENST00000419265 221 ntBASIC18.72■□□□□ 0.59
COL28A1Q2UY09 AC246785.2-201ENST00000432512 513 ntBASIC18.72■□□□□ 0.59
COL28A1Q2UY09 PNN-205ENST00000556530 601 ntTSL 2 BASIC18.72■□□□□ 0.59
COL28A1Q2UY09 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC18.72■□□□□ 0.59
COL28A1Q2UY09 KLK8-205ENST00000593490 267 ntTSL 3 BASIC18.72■□□□□ 0.59
COL28A1Q2UY09 IRF5-214ENST00000613821 595 ntTSL 5 BASIC18.72■□□□□ 0.59
COL28A1Q2UY09 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC18.72■□□□□ 0.59
COL28A1Q2UY09 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL28A1Q2UY09 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL28A1Q2UY09 LINC01521-201ENST00000504184 1943 ntBASIC18.72■□□□□ 0.59
COL28A1Q2UY09 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL28A1Q2UY09 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL28A1Q2UY09 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL28A1Q2UY09 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL28A1Q2UY09 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC18.71■□□□□ 0.59
COL28A1Q2UY09 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
COL28A1Q2UY09 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL28A1Q2UY09 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL28A1Q2UY09 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC18.71■□□□□ 0.59
COL28A1Q2UY09 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL28A1Q2UY09 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC18.71■□□□□ 0.59
COL28A1Q2UY09 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL28A1Q2UY09 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL28A1Q2UY09 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC18.71■□□□□ 0.59
COL28A1Q2UY09 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL28A1Q2UY09 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL28A1Q2UY09 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL28A1Q2UY09 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
COL28A1Q2UY09 AP000593.1-201ENST00000393668 712 ntBASIC18.71■□□□□ 0.59
COL28A1Q2UY09 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
COL28A1Q2UY09 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC18.71■□□□□ 0.59
COL28A1Q2UY09 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC18.71■□□□□ 0.59
COL28A1Q2UY09 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL28A1Q2UY09 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL28A1Q2UY09 AC006538.3-201ENST00000612495 578 ntBASIC18.71■□□□□ 0.59
COL28A1Q2UY09 FAM87A-204ENST00000613235 858 ntBASIC18.71■□□□□ 0.59
COL28A1Q2UY09 AL121956.5-201ENST00000625261 221 ntBASIC18.71■□□□□ 0.59
COL28A1Q2UY09 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL28A1Q2UY09 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
COL28A1Q2UY09 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC18.71■□□□□ 0.59
COL28A1Q2UY09 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL28A1Q2UY09 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC18.71■□□□□ 0.59
COL28A1Q2UY09 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
COL28A1Q2UY09 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC18.71■□□□□ 0.58
COL28A1Q2UY09 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC18.71■□□□□ 0.58
COL28A1Q2UY09 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL28A1Q2UY09 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL28A1Q2UY09 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms