Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC18.81■□□□□ 0.6
PCDH1Q08174 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PCDH1Q08174 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
PCDH1Q08174 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC18.81■□□□□ 0.6
PCDH1Q08174 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC18.81■□□□□ 0.6
PCDH1Q08174 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PCDH1Q08174 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
PCDH1Q08174 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
PCDH1Q08174 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
PCDH1Q08174 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PCDH1Q08174 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
PCDH1Q08174 KRT8P8-201ENST00000434750 1448 ntBASIC18.81■□□□□ 0.6
PCDH1Q08174 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC18.81■□□□□ 0.6
PCDH1Q08174 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PCDH1Q08174 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC18.81■□□□□ 0.6
PCDH1Q08174 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
PCDH1Q08174 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.81■□□□□ 0.6
PCDH1Q08174 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
PCDH1Q08174 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC18.81■□□□□ 0.6
PCDH1Q08174 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC18.81■□□□□ 0.6
PCDH1Q08174 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
PCDH1Q08174 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PCDH1Q08174 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.8■□□□□ 0.6
PCDH1Q08174 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PCDH1Q08174 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PCDH1Q08174 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
PCDH1Q08174 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PCDH1Q08174 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PCDH1Q08174 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PCDH1Q08174 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
PCDH1Q08174 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PCDH1Q08174 APTR-205ENST00000447009 902 ntTSL 2 BASIC18.8■□□□□ 0.6
PCDH1Q08174 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC18.8■□□□□ 0.6
PCDH1Q08174 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.8■□□□□ 0.6
PCDH1Q08174 RHOD-202ENST00000532559 538 ntTSL 3 BASIC18.8■□□□□ 0.6
PCDH1Q08174 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
PCDH1Q08174 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
PCDH1Q08174 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC18.8■□□□□ 0.6
PCDH1Q08174 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC18.8■□□□□ 0.6
PCDH1Q08174 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
PCDH1Q08174 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PCDH1Q08174 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
PCDH1Q08174 BX323043.1-201ENST00000641006 1765 ntBASIC18.8■□□□□ 0.6
PCDH1Q08174 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PCDH1Q08174 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PCDH1Q08174 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
PCDH1Q08174 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PCDH1Q08174 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.8■□□□□ 0.6
PCDH1Q08174 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PCDH1Q08174 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.8■□□□□ 0.6
PCDH1Q08174 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
PCDH1Q08174 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
PCDH1Q08174 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC18.79■□□□□ 0.6
PCDH1Q08174 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC18.79■□□□□ 0.6
PCDH1Q08174 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PCDH1Q08174 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PCDH1Q08174 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PCDH1Q08174 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PCDH1Q08174 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC18.79■□□□□ 0.6
PCDH1Q08174 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
PCDH1Q08174 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC18.79■□□□□ 0.6
PCDH1Q08174 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC18.79■□□□□ 0.6
PCDH1Q08174 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC18.79■□□□□ 0.6
PCDH1Q08174 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PCDH1Q08174 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
PCDH1Q08174 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.79■□□□□ 0.6
PCDH1Q08174 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
PCDH1Q08174 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.79■□□□□ 0.6
PCDH1Q08174 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
PCDH1Q08174 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
PCDH1Q08174 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.78■□□□□ 0.6
PCDH1Q08174 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC18.78■□□□□ 0.6
PCDH1Q08174 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PCDH1Q08174 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PCDH1Q08174 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.78■□□□□ 0.6
PCDH1Q08174 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PCDH1Q08174 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC18.78■□□□□ 0.6
PCDH1Q08174 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
PCDH1Q08174 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC18.78■□□□□ 0.6
PCDH1Q08174 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PCDH1Q08174 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC18.78■□□□□ 0.6
PCDH1Q08174 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PCDH1Q08174 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
PCDH1Q08174 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.78■□□□□ 0.6
PCDH1Q08174 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PCDH1Q08174 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PCDH1Q08174 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC18.78■□□□□ 0.6
PCDH1Q08174 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
PCDH1Q08174 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PCDH1Q08174 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PCDH1Q08174 ZNF815P-204ENST00000434898 1737 ntBASIC18.77■□□□□ 0.6
PCDH1Q08174 ANKRD18DP-204ENST00000455355 1975 ntBASIC18.77■□□□□ 0.6
PCDH1Q08174 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC18.77■□□□□ 0.6
PCDH1Q08174 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC18.77■□□□□ 0.6
PCDH1Q08174 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
PCDH1Q08174 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC18.77■□□□□ 0.6
PCDH1Q08174 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
PCDH1Q08174 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PCDH1Q08174 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
PCDH1Q08174 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms