Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
H3F3AP84243 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
H3F3AP84243 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC17.46■□□□□ 0.39
H3F3AP84243 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
H3F3AP84243 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
H3F3AP84243 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
H3F3AP84243 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC17.46■□□□□ 0.39
H3F3AP84243 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
H3F3AP84243 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
H3F3AP84243 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC17.46■□□□□ 0.39
H3F3AP84243 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC17.46■□□□□ 0.39
H3F3AP84243 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC17.46■□□□□ 0.39
H3F3AP84243 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
H3F3AP84243 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC17.46■□□□□ 0.39
H3F3AP84243 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
H3F3AP84243 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
H3F3AP84243 PWWP2AP1-201ENST00000429776 2273 ntBASIC17.46■□□□□ 0.39
H3F3AP84243 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
H3F3AP84243 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC17.46■□□□□ 0.38
H3F3AP84243 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.38
H3F3AP84243 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC17.46■□□□□ 0.38
H3F3AP84243 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
H3F3AP84243 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
H3F3AP84243 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
H3F3AP84243 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC17.45■□□□□ 0.38
H3F3AP84243 AL158211.5-201ENST00000623583 2518 ntBASIC17.45■□□□□ 0.38
H3F3AP84243 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
H3F3AP84243 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
H3F3AP84243 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
H3F3AP84243 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC17.45■□□□□ 0.38
H3F3AP84243 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC17.45■□□□□ 0.38
H3F3AP84243 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC17.45■□□□□ 0.38
H3F3AP84243 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
H3F3AP84243 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
H3F3AP84243 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
H3F3AP84243 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC17.45■□□□□ 0.38
H3F3AP84243 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
H3F3AP84243 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
H3F3AP84243 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
H3F3AP84243 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
H3F3AP84243 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC17.45■□□□□ 0.38
H3F3AP84243 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC17.45■□□□□ 0.38
H3F3AP84243 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
H3F3AP84243 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
H3F3AP84243 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
H3F3AP84243 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
H3F3AP84243 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC17.44■□□□□ 0.38
H3F3AP84243 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
H3F3AP84243 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC17.44■□□□□ 0.38
H3F3AP84243 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC17.44■□□□□ 0.38
H3F3AP84243 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
H3F3AP84243 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
H3F3AP84243 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC17.44■□□□□ 0.38
H3F3AP84243 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC17.44■□□□□ 0.38
H3F3AP84243 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
H3F3AP84243 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC17.44■□□□□ 0.38
H3F3AP84243 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC17.44■□□□□ 0.38
H3F3AP84243 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
H3F3AP84243 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC17.44■□□□□ 0.38
H3F3AP84243 AC142381.4-202ENST00000563973 229 ntBASIC17.44■□□□□ 0.38
H3F3AP84243 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC17.44■□□□□ 0.38
H3F3AP84243 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
H3F3AP84243 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
H3F3AP84243 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC17.44■□□□□ 0.38
H3F3AP84243 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
H3F3AP84243 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC17.44■□□□□ 0.38
H3F3AP84243 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC17.44■□□□□ 0.38
H3F3AP84243 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
H3F3AP84243 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
H3F3AP84243 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
H3F3AP84243 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC17.44■□□□□ 0.38
H3F3AP84243 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
H3F3AP84243 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
H3F3AP84243 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC17.43■□□□□ 0.38
H3F3AP84243 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
H3F3AP84243 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC17.43■□□□□ 0.38
H3F3AP84243 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
H3F3AP84243 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
H3F3AP84243 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
H3F3AP84243 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
H3F3AP84243 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
H3F3AP84243 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
H3F3AP84243 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC17.43■□□□□ 0.38
H3F3AP84243 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
H3F3AP84243 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
H3F3AP84243 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
H3F3AP84243 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC17.43■□□□□ 0.38
H3F3AP84243 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC17.43■□□□□ 0.38
H3F3AP84243 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC17.43■□□□□ 0.38
H3F3AP84243 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC17.43■□□□□ 0.38
H3F3AP84243 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC17.43■□□□□ 0.38
H3F3AP84243 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
H3F3AP84243 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
H3F3AP84243 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
H3F3AP84243 POLI-202ENST00000406285 2030 ntTSL 2 BASIC17.43■□□□□ 0.38
H3F3AP84243 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC17.43■□□□□ 0.38
H3F3AP84243 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
H3F3AP84243 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC17.43■□□□□ 0.38
H3F3AP84243 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
H3F3AP84243 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms