Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PEX3P56589 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
PEX3P56589 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PEX3P56589 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PEX3P56589 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC21.52■■□□□ 1.04
PEX3P56589 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
PEX3P56589 PWWP2AP1-201ENST00000429776 2273 ntBASIC21.52■■□□□ 1.04
PEX3P56589 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PEX3P56589 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
PEX3P56589 MIR718-201ENST00000390190 70 ntBASIC21.52■■□□□ 1.04
PEX3P56589 AL353807.1-201ENST00000427475 662 ntBASIC21.52■■□□□ 1.04
PEX3P56589 AC012618.2-201ENST00000428058 849 ntBASIC21.52■■□□□ 1.04
PEX3P56589 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
PEX3P56589 AP002982.1-201ENST00000492365 877 ntBASIC21.52■■□□□ 1.04
PEX3P56589 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC21.52■■□□□ 1.04
PEX3P56589 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
PEX3P56589 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
PEX3P56589 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PEX3P56589 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC21.52■■□□□ 1.04
PEX3P56589 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC21.52■■□□□ 1.03
PEX3P56589 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC21.52■■□□□ 1.03
PEX3P56589 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC21.52■■□□□ 1.03
PEX3P56589 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
PEX3P56589 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.03
PEX3P56589 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC21.52■■□□□ 1.03
PEX3P56589 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
PEX3P56589 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PEX3P56589 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
PEX3P56589 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
PEX3P56589 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PEX3P56589 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
PEX3P56589 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
PEX3P56589 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PEX3P56589 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
PEX3P56589 MDFI-202ENST00000373050 809 ntTSL 2 BASIC21.51■■□□□ 1.03
PEX3P56589 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC21.51■■□□□ 1.03
PEX3P56589 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC21.51■■□□□ 1.03
PEX3P56589 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
PEX3P56589 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC21.51■■□□□ 1.03
PEX3P56589 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC21.51■■□□□ 1.03
PEX3P56589 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
PEX3P56589 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PEX3P56589 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
PEX3P56589 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PEX3P56589 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC21.5■■□□□ 1.03
PEX3P56589 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PEX3P56589 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.5■■□□□ 1.03
PEX3P56589 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC21.5■■□□□ 1.03
PEX3P56589 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
PEX3P56589 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC21.5■■□□□ 1.03
PEX3P56589 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC21.5■■□□□ 1.03
PEX3P56589 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC21.5■■□□□ 1.03
PEX3P56589 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC21.5■■□□□ 1.03
PEX3P56589 RPS15-203ENST00000586096 570 ntTSL 2 BASIC21.5■■□□□ 1.03
PEX3P56589 AL353708.3-201ENST00000610272 989 ntBASIC21.5■■□□□ 1.03
PEX3P56589 AL049637.2-201ENST00000641778 930 ntBASIC21.5■■□□□ 1.03
PEX3P56589 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
PEX3P56589 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
PEX3P56589 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
PEX3P56589 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC21.5■■□□□ 1.03
PEX3P56589 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
PEX3P56589 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
PEX3P56589 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC21.5■■□□□ 1.03
PEX3P56589 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PEX3P56589 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PEX3P56589 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PEX3P56589 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC21.49■■□□□ 1.03
PEX3P56589 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PEX3P56589 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
PEX3P56589 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC21.49■■□□□ 1.03
PEX3P56589 TREX1-205ENST00000625293 1783 ntBASIC21.49■■□□□ 1.03
PEX3P56589 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC21.49■■□□□ 1.03
PEX3P56589 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC21.49■■□□□ 1.03
PEX3P56589 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC21.49■■□□□ 1.03
PEX3P56589 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PEX3P56589 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PEX3P56589 NIFKP9-201ENST00000419265 221 ntBASIC21.49■■□□□ 1.03
PEX3P56589 SAPCD2P4-201ENST00000424595 1171 ntBASIC21.49■■□□□ 1.03
PEX3P56589 NME1-207ENST00000480143 964 ntTSL 2 BASIC21.49■■□□□ 1.03
PEX3P56589 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC21.49■■□□□ 1.03
PEX3P56589 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC21.49■■□□□ 1.03
PEX3P56589 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC21.49■■□□□ 1.03
PEX3P56589 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
PEX3P56589 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PEX3P56589 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PEX3P56589 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PEX3P56589 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PEX3P56589 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
PEX3P56589 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC21.48■■□□□ 1.03
PEX3P56589 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
PEX3P56589 AL158211.5-201ENST00000623583 2518 ntBASIC21.48■■□□□ 1.03
PEX3P56589 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
PEX3P56589 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
PEX3P56589 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PEX3P56589 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
PEX3P56589 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC21.48■■□□□ 1.03
PEX3P56589 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PEX3P56589 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC21.48■■□□□ 1.03
PEX3P56589 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC21.48■■□□□ 1.03
PEX3P56589 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC21.48■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 363.4 ms