Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HADHAP40939 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
HADHAP40939 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HADHAP40939 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
HADHAP40939 PWWP2AP1-201ENST00000429776 2273 ntBASIC19.72■□□□□ 0.75
HADHAP40939 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HADHAP40939 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
HADHAP40939 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HADHAP40939 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC19.72■□□□□ 0.75
HADHAP40939 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC19.72■□□□□ 0.75
HADHAP40939 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
HADHAP40939 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC19.71■□□□□ 0.75
HADHAP40939 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HADHAP40939 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC19.71■□□□□ 0.75
HADHAP40939 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC19.71■□□□□ 0.75
HADHAP40939 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
HADHAP40939 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
HADHAP40939 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
HADHAP40939 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19.71■□□□□ 0.75
HADHAP40939 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.71■□□□□ 0.75
HADHAP40939 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC19.71■□□□□ 0.75
HADHAP40939 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC19.71■□□□□ 0.75
HADHAP40939 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
HADHAP40939 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
HADHAP40939 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HADHAP40939 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HADHAP40939 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC19.71■□□□□ 0.75
HADHAP40939 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HADHAP40939 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HADHAP40939 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HADHAP40939 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
HADHAP40939 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HADHAP40939 AC124283.5-201ENST00000624661 1809 ntBASIC19.71■□□□□ 0.75
HADHAP40939 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HADHAP40939 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HADHAP40939 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HADHAP40939 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HADHAP40939 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HADHAP40939 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC19.7■□□□□ 0.74
HADHAP40939 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC19.7■□□□□ 0.74
HADHAP40939 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HADHAP40939 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HADHAP40939 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HADHAP40939 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC19.7■□□□□ 0.74
HADHAP40939 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC19.7■□□□□ 0.74
HADHAP40939 AP003097.1-201ENST00000530657 1135 ntBASIC19.7■□□□□ 0.74
HADHAP40939 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC19.7■□□□□ 0.74
HADHAP40939 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HADHAP40939 AL121829.2-201ENST00000620908 328 ntBASIC19.7■□□□□ 0.74
HADHAP40939 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
HADHAP40939 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
HADHAP40939 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HADHAP40939 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC19.7■□□□□ 0.74
HADHAP40939 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
HADHAP40939 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HADHAP40939 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HADHAP40939 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HADHAP40939 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HADHAP40939 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HADHAP40939 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
HADHAP40939 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC19.7■□□□□ 0.74
HADHAP40939 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
HADHAP40939 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
HADHAP40939 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HADHAP40939 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HADHAP40939 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC19.69■□□□□ 0.74
HADHAP40939 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
HADHAP40939 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HADHAP40939 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HADHAP40939 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC19.69■□□□□ 0.74
HADHAP40939 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HADHAP40939 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HADHAP40939 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HADHAP40939 ABHD17AP1-201ENST00000358206 933 ntBASIC19.69■□□□□ 0.74
HADHAP40939 POM121L13P-201ENST00000422362 380 ntBASIC19.69■□□□□ 0.74
HADHAP40939 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC19.69■□□□□ 0.74
HADHAP40939 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.74
HADHAP40939 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC19.69■□□□□ 0.74
HADHAP40939 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
HADHAP40939 TBCB-214ENST00000629269 413 ntTSL 5 BASIC19.69■□□□□ 0.74
HADHAP40939 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC19.69■□□□□ 0.74
HADHAP40939 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC19.69■□□□□ 0.74
HADHAP40939 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
HADHAP40939 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
HADHAP40939 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HADHAP40939 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HADHAP40939 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC19.68■□□□□ 0.74
HADHAP40939 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HADHAP40939 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HADHAP40939 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
HADHAP40939 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HADHAP40939 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HADHAP40939 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC19.68■□□□□ 0.74
HADHAP40939 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
HADHAP40939 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
HADHAP40939 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HADHAP40939 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HADHAP40939 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HADHAP40939 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
HADHAP40939 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms