Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC20.29■□□□□ 0.84
HMGA1P17096 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HMGA1P17096 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
HMGA1P17096 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
HMGA1P17096 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HMGA1P17096 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HMGA1P17096 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
HMGA1P17096 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HMGA1P17096 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HMGA1P17096 KRT8P41-201ENST00000533985 1514 ntBASIC20.28■□□□□ 0.84
HMGA1P17096 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
HMGA1P17096 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC20.28■□□□□ 0.84
HMGA1P17096 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HMGA1P17096 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
HMGA1P17096 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HMGA1P17096 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC20.28■□□□□ 0.84
HMGA1P17096 AL137013.1-201ENST00000432946 1228 ntBASIC20.28■□□□□ 0.84
HMGA1P17096 AC010203.1-204ENST00000548782 407 ntBASIC20.28■□□□□ 0.84
HMGA1P17096 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
HMGA1P17096 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC20.28■□□□□ 0.84
HMGA1P17096 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC20.28■□□□□ 0.84
HMGA1P17096 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HMGA1P17096 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC20.27■□□□□ 0.84
HMGA1P17096 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC20.27■□□□□ 0.84
HMGA1P17096 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC20.27■□□□□ 0.84
HMGA1P17096 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HMGA1P17096 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HMGA1P17096 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
HMGA1P17096 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC20.27■□□□□ 0.84
HMGA1P17096 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
HMGA1P17096 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
HMGA1P17096 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC20.27■□□□□ 0.84
HMGA1P17096 CYGB-204ENST00000589342 815 ntTSL 3 BASIC20.27■□□□□ 0.84
HMGA1P17096 FAM87A-204ENST00000613235 858 ntBASIC20.27■□□□□ 0.84
HMGA1P17096 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
HMGA1P17096 CLN6-221ENST00000637494 765 ntTSL 5 BASIC20.27■□□□□ 0.84
HMGA1P17096 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HMGA1P17096 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
HMGA1P17096 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.83
HMGA1P17096 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.83
HMGA1P17096 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
HMGA1P17096 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.27■□□□□ 0.83
HMGA1P17096 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC20.26■□□□□ 0.83
HMGA1P17096 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HMGA1P17096 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HMGA1P17096 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
HMGA1P17096 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC20.26■□□□□ 0.83
HMGA1P17096 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
HMGA1P17096 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
HMGA1P17096 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC20.26■□□□□ 0.83
HMGA1P17096 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HMGA1P17096 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HMGA1P17096 CFL2-205ENST00000555765 632 ntTSL 2 BASIC20.26■□□□□ 0.83
HMGA1P17096 RBM42-202ENST00000586618 771 ntTSL 3 BASIC20.26■□□□□ 0.83
HMGA1P17096 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HMGA1P17096 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20.26■□□□□ 0.83
HMGA1P17096 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HMGA1P17096 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HMGA1P17096 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HMGA1P17096 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC20.26■□□□□ 0.83
HMGA1P17096 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HMGA1P17096 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HMGA1P17096 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HMGA1P17096 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.25■□□□□ 0.83
HMGA1P17096 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HMGA1P17096 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC20.25■□□□□ 0.83
HMGA1P17096 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
HMGA1P17096 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC20.25■□□□□ 0.83
HMGA1P17096 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC20.25■□□□□ 0.83
HMGA1P17096 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
HMGA1P17096 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC20.25■□□□□ 0.83
HMGA1P17096 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC20.25■□□□□ 0.83
HMGA1P17096 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC20.25■□□□□ 0.83
HMGA1P17096 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC20.25■□□□□ 0.83
HMGA1P17096 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC20.25■□□□□ 0.83
HMGA1P17096 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC20.25■□□□□ 0.83
HMGA1P17096 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC20.25■□□□□ 0.83
HMGA1P17096 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HMGA1P17096 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC20.25■□□□□ 0.83
HMGA1P17096 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
HMGA1P17096 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HMGA1P17096 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC20.25■□□□□ 0.83
HMGA1P17096 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC20.25■□□□□ 0.83
HMGA1P17096 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC20.25■□□□□ 0.83
HMGA1P17096 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC20.24■□□□□ 0.83
HMGA1P17096 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC20.24■□□□□ 0.83
HMGA1P17096 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
HMGA1P17096 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
HMGA1P17096 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC20.24■□□□□ 0.83
HMGA1P17096 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HMGA1P17096 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
HMGA1P17096 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HMGA1P17096 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC20.24■□□□□ 0.83
HMGA1P17096 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HMGA1P17096 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC20.24■□□□□ 0.83
HMGA1P17096 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC20.24■□□□□ 0.83
HMGA1P17096 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC20.24■□□□□ 0.83
HMGA1P17096 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC20.24■□□□□ 0.83
HMGA1P17096 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC20.24■□□□□ 0.83
HMGA1P17096 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms