Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SEMA3DO95025 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SEMA3DO95025 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC18.68■□□□□ 0.58
SEMA3DO95025 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
SEMA3DO95025 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SEMA3DO95025 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SEMA3DO95025 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC18.68■□□□□ 0.58
SEMA3DO95025 AP006587.1-201ENST00000534129 1502 ntBASIC18.68■□□□□ 0.58
SEMA3DO95025 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
SEMA3DO95025 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SEMA3DO95025 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC18.67■□□□□ 0.58
SEMA3DO95025 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC18.67■□□□□ 0.58
SEMA3DO95025 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC18.67■□□□□ 0.58
SEMA3DO95025 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SEMA3DO95025 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SEMA3DO95025 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC18.67■□□□□ 0.58
SEMA3DO95025 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SEMA3DO95025 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SEMA3DO95025 GAS7-202ENST00000396115 929 ntTSL 5 BASIC18.67■□□□□ 0.58
SEMA3DO95025 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
SEMA3DO95025 POM121L13P-201ENST00000422362 380 ntBASIC18.67■□□□□ 0.58
SEMA3DO95025 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC18.67■□□□□ 0.58
SEMA3DO95025 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC18.67■□□□□ 0.58
SEMA3DO95025 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC18.67■□□□□ 0.58
SEMA3DO95025 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC18.67■□□□□ 0.58
SEMA3DO95025 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
SEMA3DO95025 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SEMA3DO95025 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SEMA3DO95025 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
SEMA3DO95025 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SEMA3DO95025 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SEMA3DO95025 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SEMA3DO95025 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SEMA3DO95025 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SEMA3DO95025 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SEMA3DO95025 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC18.66■□□□□ 0.58
SEMA3DO95025 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SEMA3DO95025 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
SEMA3DO95025 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC18.66■□□□□ 0.58
SEMA3DO95025 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SEMA3DO95025 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SEMA3DO95025 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC18.66■□□□□ 0.58
SEMA3DO95025 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SEMA3DO95025 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SEMA3DO95025 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SEMA3DO95025 GOLGA6L3-201ENST00000507199 1679 ntBASIC18.66■□□□□ 0.58
SEMA3DO95025 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SEMA3DO95025 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SEMA3DO95025 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SEMA3DO95025 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SEMA3DO95025 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SEMA3DO95025 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SEMA3DO95025 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.65■□□□□ 0.58
SEMA3DO95025 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SEMA3DO95025 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SEMA3DO95025 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC18.65■□□□□ 0.58
SEMA3DO95025 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.65■□□□□ 0.58
SEMA3DO95025 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC18.65■□□□□ 0.58
SEMA3DO95025 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SEMA3DO95025 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC18.65■□□□□ 0.58
SEMA3DO95025 PNN-205ENST00000556530 601 ntTSL 2 BASIC18.65■□□□□ 0.58
SEMA3DO95025 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SEMA3DO95025 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SEMA3DO95025 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC18.65■□□□□ 0.58
SEMA3DO95025 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SEMA3DO95025 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SEMA3DO95025 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SEMA3DO95025 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.65■□□□□ 0.58
SEMA3DO95025 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SEMA3DO95025 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SEMA3DO95025 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.58
SEMA3DO95025 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.64■□□□□ 0.58
SEMA3DO95025 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC18.64■□□□□ 0.58
SEMA3DO95025 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC18.64■□□□□ 0.57
SEMA3DO95025 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SEMA3DO95025 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC18.64■□□□□ 0.57
SEMA3DO95025 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SEMA3DO95025 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC18.64■□□□□ 0.57
SEMA3DO95025 RNA5SP413-201ENST00000516373 109 ntBASIC18.64■□□□□ 0.57
SEMA3DO95025 AP003097.1-201ENST00000530657 1135 ntBASIC18.64■□□□□ 0.57
SEMA3DO95025 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC18.64■□□□□ 0.57
SEMA3DO95025 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SEMA3DO95025 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC18.64■□□□□ 0.57
SEMA3DO95025 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SEMA3DO95025 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SEMA3DO95025 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC18.64■□□□□ 0.57
SEMA3DO95025 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SEMA3DO95025 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SEMA3DO95025 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC18.64■□□□□ 0.57
SEMA3DO95025 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
SEMA3DO95025 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
SEMA3DO95025 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SEMA3DO95025 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SEMA3DO95025 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
SEMA3DO95025 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SEMA3DO95025 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SEMA3DO95025 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
SEMA3DO95025 AC093484.2-201ENST00000580996 2166 ntBASIC18.64■□□□□ 0.57
SEMA3DO95025 AC116562.4-201ENST00000641316 2276 ntBASIC18.63■□□□□ 0.57
SEMA3DO95025 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms