Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
TRIM13O60858 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC19.19■□□□□ 0.66
TRIM13O60858 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM13O60858 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM13O60858 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM13O60858 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
TRIM13O60858 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC19.19■□□□□ 0.66
TRIM13O60858 APTR-203ENST00000430801 583 ntTSL 5 BASIC19.19■□□□□ 0.66
TRIM13O60858 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC19.19■□□□□ 0.66
TRIM13O60858 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM13O60858 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC19.19■□□□□ 0.66
TRIM13O60858 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19.19■□□□□ 0.66
TRIM13O60858 AC087623.3-201ENST00000607047 1098 ntBASIC19.19■□□□□ 0.66
TRIM13O60858 AC231657.2-201ENST00000624556 255 ntBASIC19.19■□□□□ 0.66
TRIM13O60858 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC19.19■□□□□ 0.66
TRIM13O60858 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC19.19■□□□□ 0.66
TRIM13O60858 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM13O60858 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC19.19■□□□□ 0.66
TRIM13O60858 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM13O60858 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
TRIM13O60858 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM13O60858 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC19.19■□□□□ 0.66
TRIM13O60858 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC19.19■□□□□ 0.66
TRIM13O60858 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC19.19■□□□□ 0.66
TRIM13O60858 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM13O60858 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM13O60858 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM13O60858 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM13O60858 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM13O60858 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC19.18■□□□□ 0.66
TRIM13O60858 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM13O60858 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM13O60858 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM13O60858 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM13O60858 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC19.18■□□□□ 0.66
TRIM13O60858 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM13O60858 KRT18P5-201ENST00000436075 1291 ntBASIC19.18■□□□□ 0.66
TRIM13O60858 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC19.18■□□□□ 0.66
TRIM13O60858 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC19.18■□□□□ 0.66
TRIM13O60858 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC19.18■□□□□ 0.66
TRIM13O60858 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM13O60858 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM13O60858 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC19.18■□□□□ 0.66
TRIM13O60858 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM13O60858 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC19.18■□□□□ 0.66
TRIM13O60858 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM13O60858 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM13O60858 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
TRIM13O60858 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM13O60858 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM13O60858 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
TRIM13O60858 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM13O60858 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM13O60858 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
TRIM13O60858 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC19.17■□□□□ 0.66
TRIM13O60858 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM13O60858 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC19.17■□□□□ 0.66
TRIM13O60858 KRT17P1-201ENST00000399211 1546 ntBASIC19.17■□□□□ 0.66
TRIM13O60858 AC141586.3-201ENST00000562166 1838 ntBASIC19.17■□□□□ 0.66
TRIM13O60858 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM13O60858 AC006015.1-201ENST00000429970 570 ntBASIC19.17■□□□□ 0.66
TRIM13O60858 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC19.17■□□□□ 0.66
TRIM13O60858 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM13O60858 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC19.17■□□□□ 0.66
TRIM13O60858 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM13O60858 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM13O60858 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM13O60858 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM13O60858 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC19.17■□□□□ 0.66
TRIM13O60858 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM13O60858 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM13O60858 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
TRIM13O60858 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC19.17■□□□□ 0.66
TRIM13O60858 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC19.17■□□□□ 0.66
TRIM13O60858 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM13O60858 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
TRIM13O60858 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM13O60858 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC19.16■□□□□ 0.66
TRIM13O60858 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC19.16■□□□□ 0.66
TRIM13O60858 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM13O60858 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM13O60858 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM13O60858 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM13O60858 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM13O60858 AL512625.2-201ENST00000417533 625 ntBASIC19.16■□□□□ 0.66
TRIM13O60858 AC007322.1-201ENST00000426983 750 ntBASIC19.16■□□□□ 0.66
TRIM13O60858 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM13O60858 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM13O60858 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
TRIM13O60858 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM13O60858 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM13O60858 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
TRIM13O60858 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC19.16■□□□□ 0.66
TRIM13O60858 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
TRIM13O60858 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM13O60858 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM13O60858 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM13O60858 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM13O60858 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
TRIM13O60858 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms