Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC21.98■■□□□ 1.11
CHMP2AO43633 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC21.98■■□□□ 1.11
CHMP2AO43633 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC21.98■■□□□ 1.11
CHMP2AO43633 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CHMP2AO43633 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
CHMP2AO43633 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
CHMP2AO43633 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC21.98■■□□□ 1.11
CHMP2AO43633 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CHMP2AO43633 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
CHMP2AO43633 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CHMP2AO43633 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CHMP2AO43633 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC21.97■■□□□ 1.11
CHMP2AO43633 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CHMP2AO43633 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC21.97■■□□□ 1.11
CHMP2AO43633 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CHMP2AO43633 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CHMP2AO43633 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CHMP2AO43633 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CHMP2AO43633 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CHMP2AO43633 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC21.97■■□□□ 1.11
CHMP2AO43633 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC21.97■■□□□ 1.11
CHMP2AO43633 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC21.97■■□□□ 1.11
CHMP2AO43633 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC21.97■■□□□ 1.11
CHMP2AO43633 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC21.97■■□□□ 1.11
CHMP2AO43633 CD177P1-201ENST00000606252 935 ntBASIC21.97■■□□□ 1.11
CHMP2AO43633 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CHMP2AO43633 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CHMP2AO43633 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
CHMP2AO43633 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC21.96■■□□□ 1.11
CHMP2AO43633 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CHMP2AO43633 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CHMP2AO43633 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CHMP2AO43633 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
CHMP2AO43633 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CHMP2AO43633 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CHMP2AO43633 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
CHMP2AO43633 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC21.96■■□□□ 1.11
CHMP2AO43633 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC21.96■■□□□ 1.11
CHMP2AO43633 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC21.96■■□□□ 1.11
CHMP2AO43633 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
CHMP2AO43633 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CHMP2AO43633 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CHMP2AO43633 NIFKP9-201ENST00000419265 221 ntBASIC21.96■■□□□ 1.11
CHMP2AO43633 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC21.96■■□□□ 1.11
CHMP2AO43633 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC21.96■■□□□ 1.11
CHMP2AO43633 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
CHMP2AO43633 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC21.96■■□□□ 1.11
CHMP2AO43633 GRAP-204ENST00000573099 846 ntTSL 3 BASIC21.96■■□□□ 1.11
CHMP2AO43633 AC073195.1-201ENST00000607241 877 ntBASIC21.96■■□□□ 1.11
CHMP2AO43633 CR392000.1-201ENST00000624770 1228 ntBASIC21.96■■□□□ 1.11
CHMP2AO43633 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
CHMP2AO43633 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
CHMP2AO43633 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC21.96■■□□□ 1.11
CHMP2AO43633 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
CHMP2AO43633 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CHMP2AO43633 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CHMP2AO43633 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC21.96■■□□□ 1.11
CHMP2AO43633 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC21.96■■□□□ 1.11
CHMP2AO43633 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
CHMP2AO43633 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CHMP2AO43633 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC21.95■■□□□ 1.1
CHMP2AO43633 MED17-221ENST00000639724 2317 ntTSL 5 BASIC21.95■■□□□ 1.1
CHMP2AO43633 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC21.95■■□□□ 1.1
CHMP2AO43633 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC21.95■■□□□ 1.1
CHMP2AO43633 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC21.95■■□□□ 1.1
CHMP2AO43633 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC21.95■■□□□ 1.1
CHMP2AO43633 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC21.95■■□□□ 1.1
CHMP2AO43633 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CHMP2AO43633 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
CHMP2AO43633 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
CHMP2AO43633 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC21.95■■□□□ 1.1
CHMP2AO43633 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC21.95■■□□□ 1.1
CHMP2AO43633 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
CHMP2AO43633 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CHMP2AO43633 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CHMP2AO43633 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
CHMP2AO43633 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
CHMP2AO43633 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CHMP2AO43633 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CHMP2AO43633 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC21.94■■□□□ 1.1
CHMP2AO43633 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC21.94■■□□□ 1.1
CHMP2AO43633 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC21.94■■□□□ 1.1
CHMP2AO43633 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC21.94■■□□□ 1.1
CHMP2AO43633 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC21.94■■□□□ 1.1
CHMP2AO43633 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CHMP2AO43633 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
CHMP2AO43633 KRT8P8-201ENST00000434750 1448 ntBASIC21.94■■□□□ 1.1
CHMP2AO43633 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CHMP2AO43633 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC21.94■■□□□ 1.1
CHMP2AO43633 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
CHMP2AO43633 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CHMP2AO43633 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CHMP2AO43633 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
CHMP2AO43633 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC21.94■■□□□ 1.1
CHMP2AO43633 AFG3L1P-217ENST00000557444 2447 ntBASIC21.94■■□□□ 1.1
CHMP2AO43633 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC21.93■■□□□ 1.1
CHMP2AO43633 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CHMP2AO43633 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CHMP2AO43633 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CHMP2AO43633 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC21.93■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms