Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC17.68■□□□□ 0.42
VPS13DQ5THJ4 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC17.68■□□□□ 0.42
VPS13DQ5THJ4 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS13DQ5THJ4 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS13DQ5THJ4 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS13DQ5THJ4 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS13DQ5THJ4 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VPS13DQ5THJ4 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC17.66■□□□□ 0.42
VPS13DQ5THJ4 AC127502.1-201ENST00000399971 1502 ntBASIC17.65■□□□□ 0.42
VPS13DQ5THJ4 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS13DQ5THJ4 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
VPS13DQ5THJ4 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VPS13DQ5THJ4 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS13DQ5THJ4 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS13DQ5THJ4 GFER-205ENST00000569451 517 ntTSL 5 BASIC17.64■□□□□ 0.41
VPS13DQ5THJ4 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC17.64■□□□□ 0.41
VPS13DQ5THJ4 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS13DQ5THJ4 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC17.63■□□□□ 0.41
VPS13DQ5THJ4 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS13DQ5THJ4 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS13DQ5THJ4 PEX7-203ENST00000541292 945 ntTSL 5 BASIC17.62■□□□□ 0.41
VPS13DQ5THJ4 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS13DQ5THJ4 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS13DQ5THJ4 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
VPS13DQ5THJ4 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VPS13DQ5THJ4 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS13DQ5THJ4 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC17.62■□□□□ 0.41
VPS13DQ5THJ4 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS13DQ5THJ4 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC17.61■□□□□ 0.41
VPS13DQ5THJ4 AC022413.1-201ENST00000624602 984 ntBASIC17.61■□□□□ 0.41
VPS13DQ5THJ4 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS13DQ5THJ4 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS13DQ5THJ4 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
VPS13DQ5THJ4 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
VPS13DQ5THJ4 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC17.61■□□□□ 0.41
VPS13DQ5THJ4 AC148477.6-201ENST00000623746 465 ntBASIC17.61■□□□□ 0.41
VPS13DQ5THJ4 HYI-213ENST00000583037 1322 ntTSL 5 BASIC17.6■□□□□ 0.41
VPS13DQ5THJ4 AC008813.1-201ENST00000536597 885 ntBASIC17.6■□□□□ 0.41
VPS13DQ5THJ4 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS13DQ5THJ4 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS13DQ5THJ4 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC17.6■□□□□ 0.41
VPS13DQ5THJ4 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS13DQ5THJ4 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
VPS13DQ5THJ4 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC17.59■□□□□ 0.41
VPS13DQ5THJ4 AL033527.3-201ENST00000566366 1196 ntBASIC17.59■□□□□ 0.41
VPS13DQ5THJ4 AC004987.1-201ENST00000428627 508 ntBASIC17.59■□□□□ 0.41
VPS13DQ5THJ4 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC17.59■□□□□ 0.41
VPS13DQ5THJ4 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC17.58■□□□□ 0.41
VPS13DQ5THJ4 RPS2-210ENST00000530225 765 ntTSL 2 BASIC17.58■□□□□ 0.41
VPS13DQ5THJ4 AC092296.2-201ENST00000589470 999 ntBASIC17.58■□□□□ 0.41
VPS13DQ5THJ4 U85056.1-201ENST00000616429 682 ntBASIC17.58■□□□□ 0.41
VPS13DQ5THJ4 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VPS13DQ5THJ4 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VPS13DQ5THJ4 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS13DQ5THJ4 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC17.57■□□□□ 0.4
VPS13DQ5THJ4 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC17.57■□□□□ 0.4
VPS13DQ5THJ4 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS13DQ5THJ4 AC018358.1-201ENST00000631079 1402 ntBASIC17.56■□□□□ 0.4
VPS13DQ5THJ4 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS13DQ5THJ4 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC17.56■□□□□ 0.4
VPS13DQ5THJ4 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
VPS13DQ5THJ4 TSPY13P-201ENST00000338964 914 ntBASIC17.56■□□□□ 0.4
VPS13DQ5THJ4 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS13DQ5THJ4 AC135983.2-203ENST00000454486 1613 ntBASIC17.56■□□□□ 0.4
VPS13DQ5THJ4 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS13DQ5THJ4 AL135925.1-201ENST00000605920 1701 ntBASIC17.55■□□□□ 0.4
VPS13DQ5THJ4 MED25-210ENST00000612854 801 ntTSL 5 BASIC17.55■□□□□ 0.4
VPS13DQ5THJ4 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VPS13DQ5THJ4 MED25-214ENST00000622402 642 ntTSL 5 BASIC17.55■□□□□ 0.4
VPS13DQ5THJ4 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
VPS13DQ5THJ4 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS13DQ5THJ4 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC17.54■□□□□ 0.4
VPS13DQ5THJ4 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
VPS13DQ5THJ4 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VPS13DQ5THJ4 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
VPS13DQ5THJ4 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VPS13DQ5THJ4 AL157400.5-201ENST00000507624 621 ntBASIC17.54■□□□□ 0.4
VPS13DQ5THJ4 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VPS13DQ5THJ4 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC17.53■□□□□ 0.4
VPS13DQ5THJ4 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
VPS13DQ5THJ4 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS13DQ5THJ4 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
VPS13DQ5THJ4 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
VPS13DQ5THJ4 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
VPS13DQ5THJ4 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
VPS13DQ5THJ4 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VPS13DQ5THJ4 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
VPS13DQ5THJ4 AC012354.3-201ENST00000623734 483 ntBASIC17.52■□□□□ 0.39
VPS13DQ5THJ4 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
VPS13DQ5THJ4 AC110285.7-201ENST00000624417 1536 ntBASIC17.51■□□□□ 0.39
VPS13DQ5THJ4 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
VPS13DQ5THJ4 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
VPS13DQ5THJ4 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
VPS13DQ5THJ4 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
VPS13DQ5THJ4 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC17.51■□□□□ 0.39
VPS13DQ5THJ4 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
VPS13DQ5THJ4 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
VPS13DQ5THJ4 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC17.51■□□□□ 0.39
VPS13DQ5THJ4 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VPS13DQ5THJ4 KRT18P60-201ENST00000312876 1297 ntBASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 270.5 ms