Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AC019069.1-201ENST00000610008 1333 ntBASIC31.33■■■□□ 2.61
SCN4AP35499 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC31.33■■■□□ 2.61
SCN4AP35499 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC31.33■■■□□ 2.61
SCN4AP35499 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC31.32■■■□□ 2.6
SCN4AP35499 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
SCN4AP35499 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
SCN4AP35499 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC31.31■■■□□ 2.6
SCN4AP35499 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC31.3■■■□□ 2.6
SCN4AP35499 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
SCN4AP35499 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
SCN4AP35499 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
SCN4AP35499 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
SCN4AP35499 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC31.29■■■□□ 2.6
SCN4AP35499 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
SCN4AP35499 AC120057.4-201ENST00000624722 1615 ntBASIC31.28■■■□□ 2.6
SCN4AP35499 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
SCN4AP35499 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
SCN4AP35499 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC31.28■■■□□ 2.6
SCN4AP35499 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
SCN4AP35499 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC31.27■■■□□ 2.6
SCN4AP35499 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
SCN4AP35499 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
SCN4AP35499 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC31.26■■■□□ 2.59
SCN4AP35499 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
SCN4AP35499 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
SCN4AP35499 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC31.25■■■□□ 2.59
SCN4AP35499 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
SCN4AP35499 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC31.24■■■□□ 2.59
SCN4AP35499 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
SCN4AP35499 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC31.23■■■□□ 2.59
SCN4AP35499 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
SCN4AP35499 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC31.22■■■□□ 2.59
SCN4AP35499 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC31.22■■■□□ 2.59
SCN4AP35499 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
SCN4AP35499 AL451085.2-201ENST00000605085 799 ntBASIC31.21■■■□□ 2.59
SCN4AP35499 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC31.21■■■□□ 2.59
SCN4AP35499 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
SCN4AP35499 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
SCN4AP35499 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC31.2■■■□□ 2.59
SCN4AP35499 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC31.2■■■□□ 2.59
SCN4AP35499 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC31.2■■■□□ 2.58
SCN4AP35499 TRIR-205ENST00000592273 783 ntTSL 3 BASIC31.19■■■□□ 2.58
SCN4AP35499 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
SCN4AP35499 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC31.19■■■□□ 2.58
SCN4AP35499 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
SCN4AP35499 HES4-204ENST00000484667 667 ntTSL 3 BASIC31.19■■■□□ 2.58
SCN4AP35499 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC31.19■■■□□ 2.58
SCN4AP35499 AC010864.1-201ENST00000609407 1511 ntBASIC31.19■■■□□ 2.58
SCN4AP35499 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC31.17■■■□□ 2.58
SCN4AP35499 AL035685.1-201ENST00000636663 812 ntBASIC31.17■■■□□ 2.58
SCN4AP35499 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC31.17■■■□□ 2.58
SCN4AP35499 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC31.17■■■□□ 2.58
SCN4AP35499 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC31.17■■■□□ 2.58
SCN4AP35499 AC135983.2-203ENST00000454486 1613 ntBASIC31.16■■■□□ 2.58
SCN4AP35499 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC31.16■■■□□ 2.58
SCN4AP35499 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC31.16■■■□□ 2.58
SCN4AP35499 AL592295.1-201ENST00000400984 884 ntBASIC31.16■■■□□ 2.58
SCN4AP35499 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
SCN4AP35499 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
SCN4AP35499 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC31.15■■■□□ 2.58
SCN4AP35499 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC31.14■■■□□ 2.58
SCN4AP35499 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC31.14■■■□□ 2.57
SCN4AP35499 WHAMMP2-203ENST00000563942 1603 ntBASIC31.13■■■□□ 2.57
SCN4AP35499 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
SCN4AP35499 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC31.12■■■□□ 2.57
SCN4AP35499 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC31.12■■■□□ 2.57
SCN4AP35499 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
SCN4AP35499 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC31.11■■■□□ 2.57
SCN4AP35499 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
SCN4AP35499 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
SCN4AP35499 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
SCN4AP35499 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
SCN4AP35499 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC31.11■■■□□ 2.57
SCN4AP35499 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
SCN4AP35499 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC31.1■■■□□ 2.57
SCN4AP35499 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
SCN4AP35499 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
SCN4AP35499 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
SCN4AP35499 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
SCN4AP35499 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
SCN4AP35499 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC31.08■■■□□ 2.57
SCN4AP35499 ECEL1P2-201ENST00000461596 1295 ntBASIC31.08■■■□□ 2.57
SCN4AP35499 RPS2-210ENST00000530225 765 ntTSL 2 BASIC31.08■■■□□ 2.57
SCN4AP35499 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
SCN4AP35499 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
SCN4AP35499 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC31.07■■■□□ 2.56
SCN4AP35499 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC31.07■■■□□ 2.56
SCN4AP35499 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC31.07■■■□□ 2.56
SCN4AP35499 MIR219A2-201ENST00000608502 1504 ntBASIC31.06■■■□□ 2.56
SCN4AP35499 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC31.06■■■□□ 2.56
SCN4AP35499 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC31.05■■■□□ 2.56
SCN4AP35499 AC129492.7-201ENST00000622992 756 ntBASIC31.05■■■□□ 2.56
SCN4AP35499 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
SCN4AP35499 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
SCN4AP35499 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
SCN4AP35499 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
SCN4AP35499 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC31.04■■■□□ 2.56
SCN4AP35499 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
SCN4AP35499 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
SCN4AP35499 MOB2-207ENST00000614710 705 ntTSL 5 BASIC31.04■■■□□ 2.56
Retrieved 100 of 98,524 protein–RNA pairs in 88.8 ms