Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
SNX3O60493 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
SNX3O60493 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
SNX3O60493 AC010864.1-201ENST00000609407 1511 ntBASIC25.41■■□□□ 1.66
SNX3O60493 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
SNX3O60493 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC25.4■■□□□ 1.66
SNX3O60493 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
SNX3O60493 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC25.39■■□□□ 1.66
SNX3O60493 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC25.39■■□□□ 1.65
SNX3O60493 AC091060.1-201ENST00000623524 1766 ntBASIC25.39■■□□□ 1.65
SNX3O60493 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
SNX3O60493 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
SNX3O60493 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC25.38■■□□□ 1.65
SNX3O60493 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC25.37■■□□□ 1.65
SNX3O60493 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC25.37■■□□□ 1.65
SNX3O60493 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC25.37■■□□□ 1.65
SNX3O60493 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC25.36■■□□□ 1.65
SNX3O60493 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC25.36■■□□□ 1.65
SNX3O60493 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC25.36■■□□□ 1.65
SNX3O60493 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC25.36■■□□□ 1.65
SNX3O60493 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
SNX3O60493 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC25.35■■□□□ 1.65
SNX3O60493 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC25.35■■□□□ 1.65
SNX3O60493 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC25.35■■□□□ 1.65
SNX3O60493 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
SNX3O60493 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
SNX3O60493 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
SNX3O60493 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC25.34■■□□□ 1.65
SNX3O60493 AP004833.2-201ENST00000532228 1454 ntBASIC25.34■■□□□ 1.65
SNX3O60493 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC25.33■■□□□ 1.65
SNX3O60493 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC25.32■■□□□ 1.64
SNX3O60493 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC25.32■■□□□ 1.64
SNX3O60493 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC25.32■■□□□ 1.64
SNX3O60493 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC25.32■■□□□ 1.64
SNX3O60493 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC25.32■■□□□ 1.64
SNX3O60493 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC25.32■■□□□ 1.64
SNX3O60493 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
SNX3O60493 AC020928.2-201ENST00000588717 2197 ntBASIC25.31■■□□□ 1.64
SNX3O60493 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC25.31■■□□□ 1.64
SNX3O60493 AC006077.2-201ENST00000623591 457 ntBASIC25.29■■□□□ 1.64
SNX3O60493 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC25.29■■□□□ 1.64
SNX3O60493 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
SNX3O60493 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
SNX3O60493 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC25.29■■□□□ 1.64
SNX3O60493 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC25.28■■□□□ 1.64
SNX3O60493 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC25.28■■□□□ 1.64
SNX3O60493 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
SNX3O60493 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC25.27■■□□□ 1.64
SNX3O60493 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC25.27■■□□□ 1.64
SNX3O60493 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
SNX3O60493 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
SNX3O60493 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
SNX3O60493 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC25.26■■□□□ 1.63
SNX3O60493 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
SNX3O60493 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
SNX3O60493 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC25.26■■□□□ 1.63
SNX3O60493 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
SNX3O60493 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC25.26■■□□□ 1.63
SNX3O60493 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
SNX3O60493 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC25.25■■□□□ 1.63
SNX3O60493 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC25.25■■□□□ 1.63
SNX3O60493 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC25.25■■□□□ 1.63
SNX3O60493 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC25.25■■□□□ 1.63
SNX3O60493 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC25.25■■□□□ 1.63
SNX3O60493 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC25.23■■□□□ 1.63
SNX3O60493 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
SNX3O60493 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
SNX3O60493 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC25.23■■□□□ 1.63
SNX3O60493 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
SNX3O60493 DYNLL1-208ENST00000550178 581 ntBASIC25.22■■□□□ 1.63
SNX3O60493 WASH5P-204ENST00000632292 975 ntBASIC25.22■■□□□ 1.63
SNX3O60493 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC25.21■■□□□ 1.63
SNX3O60493 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
SNX3O60493 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC25.2■■□□□ 1.63
SNX3O60493 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.63
SNX3O60493 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC25.2■■□□□ 1.63
SNX3O60493 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC25.2■■□□□ 1.63
SNX3O60493 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC25.19■■□□□ 1.62
SNX3O60493 SNAI3-AS1-204ENST00000567997 2048 ntBASIC25.19■■□□□ 1.62
SNX3O60493 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC25.18■■□□□ 1.62
SNX3O60493 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC25.18■■□□□ 1.62
SNX3O60493 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
SNX3O60493 AC145676.1-201ENST00000514988 2004 ntBASIC25.17■■□□□ 1.62
SNX3O60493 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
SNX3O60493 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
SNX3O60493 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
SNX3O60493 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
SNX3O60493 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC25.17■■□□□ 1.62
SNX3O60493 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC25.16■■□□□ 1.62
SNX3O60493 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC25.16■■□□□ 1.62
SNX3O60493 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC25.16■■□□□ 1.62
SNX3O60493 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC25.16■■□□□ 1.62
SNX3O60493 AC093323.1-202ENST00000635031 2045 ntBASIC25.15■■□□□ 1.62
SNX3O60493 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC25.15■■□□□ 1.62
SNX3O60493 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC25.15■■□□□ 1.62
SNX3O60493 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
SNX3O60493 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
SNX3O60493 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
SNX3O60493 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
SNX3O60493 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 14.9 ms