Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 NUMB-217ENST00000555738 1553 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 MR1-208ENST00000614012 7860 ntAPPRIS P1 TSL 5 BASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 KIAA0100-201ENST00000389003 6852 ntAPPRIS ALT2 TSL 5 BASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 ATXN2-214ENST00000535949 3205 ntAPPRIS ALT2 TSL 1 (best) BASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 SPATS2-222ENST00000552918 2993 ntAPPRIS P1 TSL 2 BASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 MTND5P19-201ENST00000424872 1794 ntBASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 OR8H1-203ENST00000641600 2927 ntAPPRIS P2 BASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 PBRM1-206ENST00000409114 5015 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 ACSL4-204ENST00000469796 5225 ntAPPRIS P4 TSL 5 BASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 DDX46-201ENST00000354283 3821 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 RNU6-1120P-201ENST00000362988 108 ntBASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 Y_RNA.339-201ENST00000365325 102 ntBASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 RNU4-2-201ENST00000365668 141 ntBASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 Y_RNA.515-201ENST00000384535 112 ntBASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 TIMD4-203ENST00000407087 1145 ntAPPRIS ALT2 TSL 2 BASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 AC243428.1-201ENST00000421099 264 ntBASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 IGKV1OR9-1-201ENST00000424370 284 ntBASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 FECHP1-201ENST00000431896 1214 ntBASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 AL356276.2-201ENST00000435919 558 ntBASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 BNIP3P2-201ENST00000441221 577 ntBASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 NPM1P39-201ENST00000449818 867 ntBASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 PSPC1P2-201ENST00000455130 225 ntBASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 ELOCP24-201ENST00000456370 334 ntBASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 RPL22P13-201ENST00000493291 347 ntBASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 LINC01085-203ENST00000511195 326 ntBASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 RNU6-408P-201ENST00000515910 100 ntBASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 AP004607.5-201ENST00000532034 217 ntBASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 AC013828.2-201ENST00000532487 235 ntBASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 AL389895.1-201ENST00000554127 252 ntBASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 FAM30C-201ENST00000561158 410 ntBASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 AC138915.2-201ENST00000569776 97 ntBASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 AC027801.5-201ENST00000574365 416 ntTSL 3 BASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 AC023206.1-201ENST00000605824 298 ntBASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 AP005328.2-201ENST00000606879 657 ntTSL 3 BASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 AC096861.1-201ENST00000616652 240 ntBASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 AC103564.3-201ENST00000621194 220 ntBASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 AL132796.3-201ENST00000624703 900 ntBASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 EIF4G2-202ENST00000396525 3346 ntAPPRIS ALT2 TSL 5 BASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 PPFIA2-205ENST00000541570 2976 ntTSL 2 BASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 FBXL13-201ENST00000313221 2744 ntTSL 2 BASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 RGPD3-201ENST00000304514 5510 ntAPPRIS ALT2 TSL 2 BASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 LINC01537-201ENST00000450804 2450 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 ASPH-209ENST00000517903 2658 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
TRIM35Q9UPQ4 LINC01720-201ENST00000413356 2216 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 TMOD2-203ENST00000539962 3000 ntTSL 2 BASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 AGXT2-206ENST00000618015 2181 ntTSL 5 BASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 HSPG2-203ENST00000374695 14327 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 OPALIN-204ENST00000419479 3581 ntTSL 2 BASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 BDNF-209ENST00000420794 4176 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 POT1-AS1-203ENST00000435452 2147 ntTSL 2 BASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 TAF1-204ENST00000423759 7722 ntAPPRIS ALT2 TSL 5 BASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 PCDHB1-201ENST00000306549 8210 ntAPPRIS P1 BASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 FLJ42393-201ENST00000623801 2270 ntBASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 LINC01822-201ENST00000435682 2098 ntTSL 2 BASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 MAP3K7CL-203ENST00000341618 1855 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 Y_RNA.5-201ENST00000362334 102 ntBASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 Y_RNA.364-201ENST00000365532 101 ntBASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 Y_RNA.455-201ENST00000384230 98 ntBASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 CD3D-202ENST00000392884 476 ntTSL 2 BASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 FAUP2-201ENST00000394301 401 ntBASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 AL139135.1-201ENST00000412675 209 ntBASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 TPMTP2-201ENST00000414372 726 ntBASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 MICG-208ENST00000416822 132 ntBASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 AC234782.4-201ENST00000417646 1048 ntBASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 RBMY2KP-201ENST00000418221 992 ntBASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 NENFP1-201ENST00000419476 466 ntBASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 AC108463.2-201ENST00000451230 412 ntTSL 5 BASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 MRPS31P2-201ENST00000451581 518 ntBASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 GAPDHP53-201ENST00000458397 924 ntBASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 RN7SL456P-201ENST00000469290 295 ntBASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 AC112184.1-201ENST00000505179 312 ntBASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 AC116634.1-201ENST00000506926 447 ntTSL 5 BASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 AC021151.1-201ENST00000506933 183 ntTSL 3 BASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 RPS20-202ENST00000518875 671 ntTSL 2 BASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 LINC00964-204ENST00000528090 572 ntTSL 4 BASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 AP002336.1-201ENST00000531426 422 ntTSL 2 BASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 AC090673.2-201ENST00000544279 454 ntTSL 3 BASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 OR4T1P-201ENST00000554933 911 ntBASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 MIR378H-201ENST00000579966 83 ntBASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 AC090241.1-201ENST00000587732 621 ntBASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 DNM1L-202ENST00000358214 3229 ntTSL 5 BASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 NUP107-201ENST00000229179 6457 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 RAD18-201ENST00000264926 5886 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 USP44-208ENST00000552440 1818 ntTSL 5 BASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 ANGPT2-203ENST00000523120 2997 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 AC027279.1-201ENST00000568885 4284 ntBASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 SERPINB13-202ENST00000344731 3114 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Retrieved 100 of 98,524 protein–RNA pairs in 74.6 ms