Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
NKX3-1Q99801 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC4.54□□□□□ -1.68
NKX3-1Q99801 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC4.54□□□□□ -1.68
NKX3-1Q99801 MAX-203ENST00000341653 330 ntTSL 2 BASIC4.54□□□□□ -1.68
NKX3-1Q99801 MIR133B-201ENST00000362210 119 ntBASIC4.54□□□□□ -1.68
NKX3-1Q99801 RN7SKP74-201ENST00000362849 309 ntBASIC4.54□□□□□ -1.68
NKX3-1Q99801 RNU6-609P-201ENST00000365459 107 ntBASIC4.54□□□□□ -1.68
NKX3-1Q99801 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
NKX3-1Q99801 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
NKX3-1Q99801 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC4.54□□□□□ -1.68
NKX3-1Q99801 AL596448.1-201ENST00000415024 392 ntBASIC4.54□□□□□ -1.68
NKX3-1Q99801 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC4.54□□□□□ -1.68
NKX3-1Q99801 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC4.54□□□□□ -1.68
NKX3-1Q99801 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC4.54□□□□□ -1.68
NKX3-1Q99801 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC4.54□□□□□ -1.68
NKX3-1Q99801 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC4.54□□□□□ -1.68
NKX3-1Q99801 C21orf91-OT1-203ENST00000439392 497 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
NKX3-1Q99801 AL390119.1-201ENST00000440329 312 ntBASIC4.54□□□□□ -1.68
NKX3-1Q99801 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC4.54□□□□□ -1.68
NKX3-1Q99801 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC4.54□□□□□ -1.68
NKX3-1Q99801 AC016395.1-201ENST00000444086 465 ntTSL 3 BASIC4.54□□□□□ -1.68
NKX3-1Q99801 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC4.54□□□□□ -1.68
NKX3-1Q99801 HMGN1P5-201ENST00000448591 263 ntBASIC4.54□□□□□ -1.68
NKX3-1Q99801 LINC00704-203ENST00000449712 703 ntTSL 3 BASIC4.54□□□□□ -1.68
NKX3-1Q99801 RANP1-206ENST00000455094 651 ntBASIC4.54□□□□□ -1.68
NKX3-1Q99801 LDHBP2-201ENST00000456969 1005 ntBASIC4.54□□□□□ -1.68
NKX3-1Q99801 RPS4XP12-201ENST00000461747 709 ntBASIC4.54□□□□□ -1.68
NKX3-1Q99801 RN7SL51P-201ENST00000468230 285 ntBASIC4.54□□□□□ -1.68
NKX3-1Q99801 CBX1P5-201ENST00000475330 559 ntBASIC4.54□□□□□ -1.68
NKX3-1Q99801 SIAH1P1-201ENST00000479411 923 ntBASIC4.54□□□□□ -1.68
NKX3-1Q99801 AC008410.1-201ENST00000483777 339 ntBASIC4.54□□□□□ -1.68
NKX3-1Q99801 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC4.54□□□□□ -1.68
NKX3-1Q99801 RPS24P16-201ENST00000497294 392 ntBASIC4.54□□□□□ -1.68
NKX3-1Q99801 MTCO2P9-201ENST00000503214 694 ntBASIC4.54□□□□□ -1.68
NKX3-1Q99801 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC4.54□□□□□ -1.68
NKX3-1Q99801 MGST2-204ENST00000506797 634 ntTSL 2 BASIC4.54□□□□□ -1.68
NKX3-1Q99801 RNU6-334P-201ENST00000517072 102 ntBASIC4.54□□□□□ -1.68
NKX3-1Q99801 IGLV2-28-201ENST00000520681 304 ntBASIC4.54□□□□□ -1.68
NKX3-1Q99801 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC4.54□□□□□ -1.68
NKX3-1Q99801 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC4.54□□□□□ -1.68
NKX3-1Q99801 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC4.54□□□□□ -1.68
NKX3-1Q99801 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
NKX3-1Q99801 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC4.54□□□□□ -1.68
NKX3-1Q99801 AC068020.1-201ENST00000594215 661 ntBASIC4.54□□□□□ -1.68
NKX3-1Q99801 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
NKX3-1Q99801 AC130352.1-201ENST00000602979 661 ntBASIC4.54□□□□□ -1.68
NKX3-1Q99801 AC019131.2-201ENST00000609071 870 ntBASIC4.54□□□□□ -1.68
NKX3-1Q99801 AP000864.1-201ENST00000609424 650 ntBASIC4.54□□□□□ -1.68
NKX3-1Q99801 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC4.54□□□□□ -1.68
NKX3-1Q99801 RPL23AP61-201ENST00000623642 466 ntBASIC4.54□□□□□ -1.68
NKX3-1Q99801 FRG1DP-201ENST00000635586 771 ntBASIC4.54□□□□□ -1.68
NKX3-1Q99801 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC4.54□□□□□ -1.68
NKX3-1Q99801 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC4.54□□□□□ -1.68
NKX3-1Q99801 AL590396.2-201ENST00000636511 1041 ntBASIC4.54□□□□□ -1.68
NKX3-1Q99801 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
NKX3-1Q99801 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC4.54□□□□□ -1.68
NKX3-1Q99801 AL606537.1-201ENST00000607258 2011 ntBASIC4.54□□□□□ -1.68
NKX3-1Q99801 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
NKX3-1Q99801 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC4.54□□□□□ -1.68
NKX3-1Q99801 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
NKX3-1Q99801 ALB-209ENST00000503124 1741 ntTSL 5 BASIC4.54□□□□□ -1.68
NKX3-1Q99801 AC021205.3-201ENST00000609680 1709 ntTSL 3 BASIC4.54□□□□□ -1.68
NKX3-1Q99801 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
NKX3-1Q99801 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
NKX3-1Q99801 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
NKX3-1Q99801 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
NKX3-1Q99801 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
NKX3-1Q99801 CD86-204ENST00000469710 1604 ntTSL 2 BASIC4.54□□□□□ -1.68
NKX3-1Q99801 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC4.53□□□□□ -1.68
NKX3-1Q99801 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC4.53□□□□□ -1.68
NKX3-1Q99801 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC4.53□□□□□ -1.68
NKX3-1Q99801 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
NKX3-1Q99801 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
NKX3-1Q99801 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
NKX3-1Q99801 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
NKX3-1Q99801 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
NKX3-1Q99801 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC4.53□□□□□ -1.68
NKX3-1Q99801 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
NKX3-1Q99801 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
NKX3-1Q99801 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
NKX3-1Q99801 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
NKX3-1Q99801 MIR143-201ENST00000385300 106 ntBASIC4.53□□□□□ -1.68
NKX3-1Q99801 RNU4-27P-201ENST00000410889 139 ntBASIC4.53□□□□□ -1.68
NKX3-1Q99801 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
NKX3-1Q99801 HSPE1P16-201ENST00000426640 348 ntBASIC4.53□□□□□ -1.68
NKX3-1Q99801 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC4.53□□□□□ -1.68
NKX3-1Q99801 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC4.53□□□□□ -1.68
NKX3-1Q99801 BX119904.1-201ENST00000432026 348 ntBASIC4.53□□□□□ -1.68
NKX3-1Q99801 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC4.53□□□□□ -1.68
NKX3-1Q99801 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC4.53□□□□□ -1.68
NKX3-1Q99801 GXYLT1P1-201ENST00000446657 490 ntBASIC4.53□□□□□ -1.68
NKX3-1Q99801 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC4.53□□□□□ -1.68
NKX3-1Q99801 RPS27AP2-201ENST00000457576 465 ntBASIC4.53□□□□□ -1.68
NKX3-1Q99801 AC022133.1-201ENST00000490961 571 ntBASIC4.53□□□□□ -1.68
NKX3-1Q99801 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC4.53□□□□□ -1.68
NKX3-1Q99801 FGB-207ENST00000509493 1164 ntTSL 5 BASIC4.53□□□□□ -1.68
NKX3-1Q99801 C1GALT1P2-201ENST00000510813 1104 ntBASIC4.53□□□□□ -1.68
NKX3-1Q99801 ZCCHC10-210ENST00000513848 876 ntAPPRIS ALT2 TSL 2 BASIC4.53□□□□□ -1.68
NKX3-1Q99801 ATP5LP3-201ENST00000514223 304 ntBASIC4.53□□□□□ -1.68
NKX3-1Q99801 AC112198.4-201ENST00000515450 351 ntBASIC4.53□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 95.1 ms