Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 OR11I1P-201ENST00000486033 954 ntBASIC5.13□□□□□ -1.59
MSH3P20585 AC069304.1-201ENST00000491593 704 ntBASIC5.13□□□□□ -1.59
MSH3P20585 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC5.13□□□□□ -1.59
MSH3P20585 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC5.13□□□□□ -1.59
MSH3P20585 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC5.13□□□□□ -1.59
MSH3P20585 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC5.13□□□□□ -1.59
MSH3P20585 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC5.13□□□□□ -1.59
MSH3P20585 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC5.13□□□□□ -1.59
MSH3P20585 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC5.13□□□□□ -1.59
MSH3P20585 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC5.13□□□□□ -1.59
MSH3P20585 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC5.13□□□□□ -1.59
MSH3P20585 HAUS8P1-201ENST00000549005 542 ntBASIC5.13□□□□□ -1.59
MSH3P20585 AC074029.2-201ENST00000551045 634 ntBASIC5.13□□□□□ -1.59
MSH3P20585 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC5.13□□□□□ -1.59
MSH3P20585 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
MSH3P20585 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC5.13□□□□□ -1.59
MSH3P20585 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC5.13□□□□□ -1.59
MSH3P20585 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC5.13□□□□□ -1.59
MSH3P20585 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC5.13□□□□□ -1.59
MSH3P20585 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC5.13□□□□□ -1.59
MSH3P20585 AC026790.2-201ENST00000606282 430 ntBASIC5.13□□□□□ -1.59
MSH3P20585 OR8G7P-201ENST00000616658 848 ntBASIC5.13□□□□□ -1.59
MSH3P20585 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC5.13□□□□□ -1.59
MSH3P20585 Metazoa_SRP.179-201ENST00000619020 241 ntBASIC5.13□□□□□ -1.59
MSH3P20585 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC5.13□□□□□ -1.59
MSH3P20585 AC074276.2-201ENST00000619891 348 ntBASIC5.13□□□□□ -1.59
MSH3P20585 AC099494.2-201ENST00000623371 978 ntBASIC5.13□□□□□ -1.59
MSH3P20585 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC5.13□□□□□ -1.59
MSH3P20585 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC5.13□□□□□ -1.59
MSH3P20585 SAMMSON-227ENST00000642114 1199 ntBASIC5.13□□□□□ -1.59
MSH3P20585 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC5.13□□□□□ -1.59
MSH3P20585 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC5.13□□□□□ -1.59
MSH3P20585 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC5.13□□□□□ -1.59
MSH3P20585 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
MSH3P20585 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
MSH3P20585 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
MSH3P20585 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC5.13□□□□□ -1.59
MSH3P20585 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
MSH3P20585 AP001002.1-201ENST00000625148 1513 ntBASIC5.13□□□□□ -1.59
MSH3P20585 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
MSH3P20585 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
MSH3P20585 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
MSH3P20585 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
MSH3P20585 C4BPAP1-201ENST00000415474 1893 ntBASIC5.12□□□□□ -1.59
MSH3P20585 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC5.12□□□□□ -1.59
MSH3P20585 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
MSH3P20585 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
MSH3P20585 IFNA10-201ENST00000357374 963 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
MSH3P20585 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
MSH3P20585 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC5.12□□□□□ -1.59
MSH3P20585 RNU6-1176P-201ENST00000390955 107 ntBASIC5.12□□□□□ -1.59
MSH3P20585 MIR1182-201ENST00000408363 97 ntBASIC5.12□□□□□ -1.59
MSH3P20585 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC5.12□□□□□ -1.59
MSH3P20585 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC5.12□□□□□ -1.59
MSH3P20585 AC073464.3-201ENST00000422564 712 ntBASIC5.12□□□□□ -1.59
MSH3P20585 EI24P4-201ENST00000423683 1078 ntBASIC5.12□□□□□ -1.59
MSH3P20585 SCAND3P1-201ENST00000439854 1060 ntBASIC5.12□□□□□ -1.59
MSH3P20585 SNRPFP2-201ENST00000440710 251 ntBASIC5.12□□□□□ -1.59
MSH3P20585 VN1R48P-201ENST00000448149 1036 ntBASIC5.12□□□□□ -1.59
MSH3P20585 SNRPCP2-201ENST00000504370 475 ntBASIC5.12□□□□□ -1.59
MSH3P20585 AC006499.3-201ENST00000506077 748 ntBASIC5.12□□□□□ -1.59
MSH3P20585 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC5.12□□□□□ -1.59
MSH3P20585 RNU6-513P-201ENST00000516104 104 ntBASIC5.12□□□□□ -1.59
MSH3P20585 RAD21-204ENST00000518055 896 ntTSL 2 BASIC5.12□□□□□ -1.59
MSH3P20585 SEC11B-201ENST00000518383 499 ntBASIC5.12□□□□□ -1.59
MSH3P20585 AC022832.1-201ENST00000530718 645 ntBASIC5.12□□□□□ -1.59
MSH3P20585 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC5.12□□□□□ -1.59
MSH3P20585 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.12□□□□□ -1.59
MSH3P20585 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
MSH3P20585 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC5.12□□□□□ -1.59
MSH3P20585 BNIP3P35-201ENST00000604530 490 ntBASIC5.12□□□□□ -1.59
MSH3P20585 AC105148.1-201ENST00000604961 409 ntBASIC5.12□□□□□ -1.59
MSH3P20585 AC084824.5-201ENST00000612009 413 ntBASIC5.12□□□□□ -1.59
MSH3P20585 AL121612.2-201ENST00000612261 482 ntBASIC5.12□□□□□ -1.59
MSH3P20585 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC5.12□□□□□ -1.59
MSH3P20585 AC106858.1-201ENST00000637497 429 ntBASIC5.12□□□□□ -1.59
MSH3P20585 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC5.12□□□□□ -1.59
MSH3P20585 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
MSH3P20585 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
MSH3P20585 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC5.12□□□□□ -1.59
MSH3P20585 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
MSH3P20585 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC5.12□□□□□ -1.59
MSH3P20585 SMG1P4-204ENST00000523028 4131 ntBASIC5.12□□□□□ -1.59
MSH3P20585 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.12□□□□□ -1.59
MSH3P20585 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
MSH3P20585 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
MSH3P20585 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
MSH3P20585 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC5.12□□□□□ -1.59
MSH3P20585 AC112255.1-201ENST00000624070 2493 ntBASIC5.12□□□□□ -1.59
MSH3P20585 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC5.12□□□□□ -1.59
MSH3P20585 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
MSH3P20585 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
MSH3P20585 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
MSH3P20585 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC5.11□□□□□ -1.59
MSH3P20585 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
MSH3P20585 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
MSH3P20585 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC5.11□□□□□ -1.59
MSH3P20585 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC5.11□□□□□ -1.59
MSH3P20585 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC5.11□□□□□ -1.59
MSH3P20585 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC5.11□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 67.1 ms