Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 AC012213.2-201ENST00000562917 4597 ntBASIC2.1□□□□□ -2.07
USH2AO75445 AC004158.1-201ENST00000564508 4319 ntBASIC2.1□□□□□ -2.07
USH2AO75445 Y_RNA.238-201ENST00000364441 102 ntBASIC2.1□□□□□ -2.07
USH2AO75445 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC2.1□□□□□ -2.07
USH2AO75445 RN7SKP16-201ENST00000410180 299 ntBASIC2.1□□□□□ -2.07
USH2AO75445 RPS17P8-201ENST00000434525 335 ntBASIC2.1□□□□□ -2.07
USH2AO75445 RNU1-88P-201ENST00000459274 128 ntBASIC2.1□□□□□ -2.07
USH2AO75445 RN7SL132P-201ENST00000478131 296 ntBASIC2.1□□□□□ -2.07
USH2AO75445 OR7E10P-201ENST00000526420 991 ntBASIC2.1□□□□□ -2.07
USH2AO75445 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC2.1□□□□□ -2.07
USH2AO75445 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC2.1□□□□□ -2.07
USH2AO75445 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC2.1□□□□□ -2.07
USH2AO75445 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC2.1□□□□□ -2.07
USH2AO75445 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC2.1□□□□□ -2.07
USH2AO75445 ZCCHC2-204ENST00000586834 4765 ntAPPRIS ALT2 TSL 1 (best) BASIC2.1□□□□□ -2.07
USH2AO75445 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC2.1□□□□□ -2.07
USH2AO75445 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC2.1□□□□□ -2.07
USH2AO75445 COL6A3-203ENST00000353578 9963 ntTSL 5 BASIC2.1□□□□□ -2.07
USH2AO75445 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
USH2AO75445 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
USH2AO75445 KIDINS220-206ENST00000473731 7248 ntTSL 5 BASIC2.1□□□□□ -2.07
USH2AO75445 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
USH2AO75445 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
USH2AO75445 STK24-208ENST00000539966 9361 ntAPPRIS ALT2 TSL 1 (best) BASIC2.09□□□□□ -2.07
USH2AO75445 RYR2-202ENST00000366574 16562 ntAPPRIS P2 TSL 1 (best) BASIC2.09□□□□□ -2.07
USH2AO75445 AKR1C1-202ENST00000380872 6705 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
USH2AO75445 MGP-201ENST00000228938 694 ntTSL 3 BASIC2.09□□□□□ -2.07
USH2AO75445 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC2.09□□□□□ -2.07
USH2AO75445 RNA5SP72-201ENST00000364442 117 ntBASIC2.09□□□□□ -2.07
USH2AO75445 IGKV1OR9-1-201ENST00000424370 284 ntBASIC2.09□□□□□ -2.07
USH2AO75445 BX323845.1-201ENST00000432417 179 ntBASIC2.09□□□□□ -2.07
USH2AO75445 PPIAP13-201ENST00000434706 478 ntBASIC2.09□□□□□ -2.07
USH2AO75445 AL691482.1-201ENST00000453255 87 ntBASIC2.09□□□□□ -2.07
USH2AO75445 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC2.09□□□□□ -2.07
USH2AO75445 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC2.09□□□□□ -2.07
USH2AO75445 BNIP3P35-201ENST00000604530 490 ntBASIC2.09□□□□□ -2.07
USH2AO75445 CR392039.5-201ENST00000623201 510 ntBASIC2.09□□□□□ -2.07
USH2AO75445 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
USH2AO75445 EIF3F-208ENST00000533626 7540 ntAPPRIS P1 TSL 2 BASIC2.09□□□□□ -2.07
USH2AO75445 CORIN-201ENST00000273857 4852 ntAPPRIS P2 TSL 1 (best) BASIC2.09□□□□□ -2.07
USH2AO75445 TRRAP-202ENST00000359863 12677 ntAPPRIS ALT2 TSL 1 (best) BASIC2.09□□□□□ -2.07
USH2AO75445 PDE4DIP-219ENST00000524974 8305 ntAPPRIS ALT2 TSL 5 BASIC2.09□□□□□ -2.07
USH2AO75445 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
USH2AO75445 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC2.09□□□□□ -2.07
USH2AO75445 ERN1-201ENST00000433197 7876 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
USH2AO75445 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC2.09□□□□□ -2.07
USH2AO75445 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC2.09□□□□□ -2.07
USH2AO75445 MECOM-203ENST00000460814 3374 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
USH2AO75445 ZBTB44-205ENST00000525842 9315 ntAPPRIS P3 TSL 1 (best) BASIC2.09□□□□□ -2.07
USH2AO75445 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC2.09□□□□□ -2.07
USH2AO75445 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC2.09□□□□□ -2.07
USH2AO75445 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC2.09□□□□□ -2.07
USH2AO75445 RNA5-8SP5-201ENST00000365304 152 ntBASIC2.09□□□□□ -2.07
USH2AO75445 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
USH2AO75445 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
USH2AO75445 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
USH2AO75445 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC2.09□□□□□ -2.07
USH2AO75445 AC114755.2-201ENST00000413520 361 ntBASIC2.09□□□□□ -2.07
USH2AO75445 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC2.09□□□□□ -2.07
USH2AO75445 MTUS2-AS2-202ENST00000434779 720 ntTSL 3 BASIC2.09□□□□□ -2.07
USH2AO75445 AL445687.2-201ENST00000458156 728 ntBASIC2.09□□□□□ -2.07
USH2AO75445 RN7SL441P-201ENST00000492388 296 ntBASIC2.09□□□□□ -2.07
USH2AO75445 RN7SL558P-201ENST00000497468 299 ntBASIC2.09□□□□□ -2.07
USH2AO75445 snoU109.5-201ENST00000516231 132 ntBASIC2.09□□□□□ -2.07
USH2AO75445 NAT2-202ENST00000520116 716 ntTSL 3 BASIC2.09□□□□□ -2.07
USH2AO75445 AC040958.1-201ENST00000561102 201 ntBASIC2.09□□□□□ -2.07
USH2AO75445 TM6SF1-207ENST00000565774 1020 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
USH2AO75445 AC087499.8-201ENST00000578406 226 ntBASIC2.09□□□□□ -2.07
USH2AO75445 AC112484.5-201ENST00000624189 228 ntBASIC2.09□□□□□ -2.07
USH2AO75445 GPR179-203ENST00000616987 7980 ntAPPRIS P2 TSL 1 (best) BASIC2.09□□□□□ -2.07
USH2AO75445 ZNF532-223ENST00000591230 4450 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
USH2AO75445 ZNF833P-201ENST00000424938 1494 ntBASIC2.09□□□□□ -2.07
USH2AO75445 LRRC37A9P-201ENST00000603850 5376 ntBASIC2.09□□□□□ -2.07
USH2AO75445 DLG2-203ENST00000376104 5139 ntAPPRIS P3 TSL 1 (best) BASIC2.09□□□□□ -2.07
USH2AO75445 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
USH2AO75445 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC2.09□□□□□ -2.07
USH2AO75445 KLHL3-209ENST00000508657 6981 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
USH2AO75445 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC2.09□□□□□ -2.07
USH2AO75445 CTNND1-216ENST00000527467 5071 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
USH2AO75445 CTNND1-229ENST00000531014 5053 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
USH2AO75445 ZFYVE26-201ENST00000347230 9675 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
USH2AO75445 PLXNC1-205ENST00000547057 2455 ntTSL 2 BASIC2.09□□□□□ -2.07
USH2AO75445 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC2.09□□□□□ -2.08
USH2AO75445 LGI1-219ENST00000636155 1618 ntTSL 5 BASIC2.09□□□□□ -2.08
USH2AO75445 OR4C11-201ENST00000302231 1045 ntAPPRIS P1 BASIC2.09□□□□□ -2.08
USH2AO75445 MIR200C-201ENST00000384980 68 ntBASIC2.09□□□□□ -2.08
USH2AO75445 SETP6-201ENST00000479329 568 ntBASIC2.09□□□□□ -2.08
USH2AO75445 ACTR3P3-201ENST00000480448 893 ntBASIC2.09□□□□□ -2.08
USH2AO75445 RPS27AP13-201ENST00000498403 237 ntBASIC2.09□□□□□ -2.08
USH2AO75445 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC2.09□□□□□ -2.08
USH2AO75445 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC2.09□□□□□ -2.08
USH2AO75445 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC2.09□□□□□ -2.08
USH2AO75445 AL121932.1-201ENST00000605542 214 ntBASIC2.09□□□□□ -2.08
USH2AO75445 MIR492-201ENST00000638676 116 ntBASIC2.09□□□□□ -2.08
USH2AO75445 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC2.09□□□□□ -2.08
USH2AO75445 KAT6B-204ENST00000372724 7106 ntAPPRIS ALT2 TSL 5 BASIC2.09□□□□□ -2.08
USH2AO75445 FBXW2-205ENST00000608872 9138 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.08
USH2AO75445 THBS1-201ENST00000260356 7775 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.08
USH2AO75445 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC2.09□□□□□ -2.08
USH2AO75445 CLASP2-225ENST00000635664 4176 ntTSL 5 BASIC2.09□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 79.3 ms