Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
COL6A1P12109 TMTC3-201ENST00000266712 7203 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
COL6A1P12109 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC6.54□□□□□ -1.36
COL6A1P12109 AC097063.1-201ENST00000426714 1797 ntBASIC6.54□□□□□ -1.36
COL6A1P12109 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC6.54□□□□□ -1.36
COL6A1P12109 MCM10-201ENST00000378694 4587 ntTSL 5 BASIC6.54□□□□□ -1.36
COL6A1P12109 POLR2B-202ENST00000381227 4108 ntAPPRIS P1 TSL 5 BASIC6.54□□□□□ -1.36
COL6A1P12109 CCDC129-211ENST00000615280 4142 ntAPPRIS ALT2 TSL 2 BASIC6.54□□□□□ -1.36
COL6A1P12109 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL6A1P12109 KIF1B-204ENST00000377086 10669 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
COL6A1P12109 OR51E1-201ENST00000396952 3612 ntAPPRIS P1 BASIC6.54□□□□□ -1.36
COL6A1P12109 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC6.54□□□□□ -1.36
COL6A1P12109 BIRC3-207ENST00000615299 4342 ntAPPRIS P1 TSL 5 BASIC6.54□□□□□ -1.36
COL6A1P12109 AC006213.6-201ENST00000623722 4179 ntBASIC6.54□□□□□ -1.36
COL6A1P12109 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
COL6A1P12109 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC6.54□□□□□ -1.36
COL6A1P12109 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL6A1P12109 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL6A1P12109 RBPJP2-201ENST00000618187 1444 ntBASIC6.54□□□□□ -1.36
COL6A1P12109 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL6A1P12109 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL6A1P12109 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC6.54□□□□□ -1.36
COL6A1P12109 OR10R3P-201ENST00000361688 942 ntBASIC6.54□□□□□ -1.36
COL6A1P12109 RNU1-146P-201ENST00000364015 165 ntBASIC6.54□□□□□ -1.36
COL6A1P12109 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC6.54□□□□□ -1.36
COL6A1P12109 RNU6-207P-201ENST00000384137 107 ntBASIC6.54□□□□□ -1.36
COL6A1P12109 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL6A1P12109 RN7SKP279-201ENST00000411383 298 ntBASIC6.54□□□□□ -1.36
COL6A1P12109 RANP4-201ENST00000413361 655 ntBASIC6.54□□□□□ -1.36
COL6A1P12109 HMGA1P8-201ENST00000414130 321 ntBASIC6.54□□□□□ -1.36
COL6A1P12109 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC6.54□□□□□ -1.36
COL6A1P12109 SLC35E1P1-201ENST00000419313 864 ntBASIC6.54□□□□□ -1.36
COL6A1P12109 EIF4A1P7-201ENST00000421800 1220 ntBASIC6.54□□□□□ -1.36
COL6A1P12109 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
COL6A1P12109 AC113412.1-201ENST00000425840 504 ntBASIC6.54□□□□□ -1.36
COL6A1P12109 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC6.54□□□□□ -1.36
COL6A1P12109 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC6.54□□□□□ -1.36
COL6A1P12109 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC6.54□□□□□ -1.36
COL6A1P12109 AC104164.1-201ENST00000460282 590 ntBASIC6.54□□□□□ -1.36
COL6A1P12109 SYT14P1-201ENST00000481459 721 ntBASIC6.54□□□□□ -1.36
COL6A1P12109 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC6.54□□□□□ -1.36
COL6A1P12109 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
COL6A1P12109 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC6.54□□□□□ -1.36
COL6A1P12109 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC6.54□□□□□ -1.36
COL6A1P12109 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC6.54□□□□□ -1.36
COL6A1P12109 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC6.54□□□□□ -1.36
COL6A1P12109 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC6.54□□□□□ -1.36
COL6A1P12109 AP000859.1-201ENST00000525536 307 ntBASIC6.54□□□□□ -1.36
COL6A1P12109 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC6.54□□□□□ -1.36
COL6A1P12109 KCTD9P4-201ENST00000526766 1166 ntBASIC6.54□□□□□ -1.36
COL6A1P12109 AC090592.1-202ENST00000533049 568 ntTSL 4 BASIC6.54□□□□□ -1.36
COL6A1P12109 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC6.54□□□□□ -1.36
COL6A1P12109 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC6.54□□□□□ -1.36
COL6A1P12109 AC092868.3-201ENST00000560515 784 ntBASIC6.54□□□□□ -1.36
COL6A1P12109 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC6.54□□□□□ -1.36
COL6A1P12109 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC6.54□□□□□ -1.36
COL6A1P12109 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC6.54□□□□□ -1.36
COL6A1P12109 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC6.54□□□□□ -1.36
COL6A1P12109 AC024589.2-201ENST00000605642 1294 ntBASIC6.54□□□□□ -1.36
COL6A1P12109 AC145423.1-201ENST00000605712 336 ntBASIC6.54□□□□□ -1.36
COL6A1P12109 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC6.54□□□□□ -1.36
COL6A1P12109 AL139099.4-201ENST00000614802 114 ntBASIC6.54□□□□□ -1.36
COL6A1P12109 AC092608.3-201ENST00000625017 386 ntBASIC6.54□□□□□ -1.36
COL6A1P12109 OR8B1P-202ENST00000641132 1178 ntBASIC6.54□□□□□ -1.36
COL6A1P12109 DOCK11P1-201ENST00000553480 5932 ntBASIC6.54□□□□□ -1.36
COL6A1P12109 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC6.54□□□□□ -1.36
COL6A1P12109 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL6A1P12109 AC093297.3-201ENST00000607056 2517 ntBASIC6.54□□□□□ -1.36
COL6A1P12109 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
COL6A1P12109 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL6A1P12109 RPGRIP1L-205ENST00000563746 4193 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
COL6A1P12109 BRWD3-201ENST00000373275 11381 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL6A1P12109 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL6A1P12109 ANKRD12-201ENST00000262126 11288 ntAPPRIS P3 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL6A1P12109 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL6A1P12109 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC6.54□□□□□ -1.36
COL6A1P12109 AL606537.1-201ENST00000607258 2011 ntBASIC6.54□□□□□ -1.36
COL6A1P12109 MLLT10-217ENST00000631589 4955 ntAPPRIS ALT2 TSL 5 BASIC6.54□□□□□ -1.36
COL6A1P12109 HTR4-206ENST00000520086 2272 ntTSL 2 BASIC6.53□□□□□ -1.36
COL6A1P12109 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL6A1P12109 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL6A1P12109 AC011369.2-201ENST00000624423 1567 ntBASIC6.53□□□□□ -1.36
COL6A1P12109 AC005674.2-201ENST00000561486 3510 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL6A1P12109 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
COL6A1P12109 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL6A1P12109 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC6.53□□□□□ -1.36
COL6A1P12109 CPEB4-202ENST00000334035 6705 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL6A1P12109 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC6.53□□□□□ -1.36
COL6A1P12109 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL6A1P12109 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL6A1P12109 RNU4-7P-201ENST00000364758 141 ntBASIC6.53□□□□□ -1.36
COL6A1P12109 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
COL6A1P12109 Z86062.1-201ENST00000406773 777 ntBASIC6.53□□□□□ -1.36
COL6A1P12109 SULT6B1-201ENST00000407963 902 ntTSL 5 BASIC6.53□□□□□ -1.36
COL6A1P12109 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC6.53□□□□□ -1.36
COL6A1P12109 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC6.53□□□□□ -1.36
COL6A1P12109 RPS4XP5-201ENST00000419038 768 ntBASIC6.53□□□□□ -1.36
COL6A1P12109 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC6.53□□□□□ -1.36
COL6A1P12109 AL365396.1-201ENST00000430854 671 ntBASIC6.53□□□□□ -1.36
COL6A1P12109 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC6.53□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 74.5 ms