Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.94□□□□□ -1.62
TRIM49D1C9J1S8 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.94□□□□□ -1.62
TRIM49D1C9J1S8 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
TRIM49D1C9J1S8 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
TRIM49D1C9J1S8 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
TRIM49D1C9J1S8 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC4.93□□□□□ -1.62
TRIM49D1C9J1S8 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
TRIM49D1C9J1S8 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC4.93□□□□□ -1.62
TRIM49D1C9J1S8 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC4.93□□□□□ -1.62
TRIM49D1C9J1S8 RNA5SP183-201ENST00000362452 119 ntBASIC4.93□□□□□ -1.62
TRIM49D1C9J1S8 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC4.93□□□□□ -1.62
TRIM49D1C9J1S8 MIR323B-201ENST00000385269 82 ntBASIC4.93□□□□□ -1.62
TRIM49D1C9J1S8 AL512422.1-201ENST00000407033 553 ntBASIC4.93□□□□□ -1.62
TRIM49D1C9J1S8 RNU6-233P-201ENST00000410845 141 ntBASIC4.93□□□□□ -1.62
TRIM49D1C9J1S8 RN7SKP293-201ENST00000411389 296 ntBASIC4.93□□□□□ -1.62
TRIM49D1C9J1S8 RPL35AP24-201ENST00000413846 330 ntBASIC4.93□□□□□ -1.62
TRIM49D1C9J1S8 ATP6V1G1P7-201ENST00000415853 349 ntBASIC4.93□□□□□ -1.62
TRIM49D1C9J1S8 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC4.93□□□□□ -1.62
TRIM49D1C9J1S8 AC016395.1-201ENST00000444086 465 ntTSL 3 BASIC4.93□□□□□ -1.62
TRIM49D1C9J1S8 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC4.93□□□□□ -1.62
TRIM49D1C9J1S8 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC4.93□□□□□ -1.62
TRIM49D1C9J1S8 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC4.93□□□□□ -1.62
TRIM49D1C9J1S8 ECM1P2-201ENST00000503354 1577 ntBASIC4.93□□□□□ -1.62
TRIM49D1C9J1S8 BTG4P1-201ENST00000510421 183 ntBASIC4.93□□□□□ -1.62
TRIM49D1C9J1S8 MAL2-208ENST00000523307 556 ntTSL 4 BASIC4.93□□□□□ -1.62
TRIM49D1C9J1S8 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC4.93□□□□□ -1.62
TRIM49D1C9J1S8 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC4.93□□□□□ -1.62
TRIM49D1C9J1S8 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC4.93□□□□□ -1.62
TRIM49D1C9J1S8 AC087477.6-201ENST00000559595 843 ntBASIC4.93□□□□□ -1.62
TRIM49D1C9J1S8 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC4.93□□□□□ -1.62
TRIM49D1C9J1S8 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
TRIM49D1C9J1S8 AC120349.1-201ENST00000599498 282 ntTSL 5 BASIC4.93□□□□□ -1.62
TRIM49D1C9J1S8 AC105254.2-201ENST00000603636 436 ntBASIC4.93□□□□□ -1.62
TRIM49D1C9J1S8 IGKV2OR2-2-201ENST00000605025 300 ntBASIC4.93□□□□□ -1.62
TRIM49D1C9J1S8 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC4.93□□□□□ -1.62
TRIM49D1C9J1S8 REV3L-214ENST00000619481 969 ntTSL 5 BASIC4.93□□□□□ -1.62
TRIM49D1C9J1S8 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC4.93□□□□□ -1.62
TRIM49D1C9J1S8 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC4.93□□□□□ -1.62
TRIM49D1C9J1S8 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
TRIM49D1C9J1S8 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
TRIM49D1C9J1S8 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
TRIM49D1C9J1S8 AC083843.2-201ENST00000568248 6253 ntBASIC4.93□□□□□ -1.62
TRIM49D1C9J1S8 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.93□□□□□ -1.62
TRIM49D1C9J1S8 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
TRIM49D1C9J1S8 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC4.92□□□□□ -1.62
TRIM49D1C9J1S8 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.92□□□□□ -1.62
TRIM49D1C9J1S8 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
TRIM49D1C9J1S8 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
TRIM49D1C9J1S8 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.92□□□□□ -1.62
TRIM49D1C9J1S8 RNU1-43P-201ENST00000365052 165 ntBASIC4.92□□□□□ -1.62
TRIM49D1C9J1S8 EI24P3-201ENST00000399046 1062 ntBASIC4.92□□□□□ -1.62
TRIM49D1C9J1S8 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
TRIM49D1C9J1S8 RN7SKP97-201ENST00000410966 333 ntBASIC4.92□□□□□ -1.62
TRIM49D1C9J1S8 AL359636.2-201ENST00000412262 259 ntTSL 3 BASIC4.92□□□□□ -1.62
TRIM49D1C9J1S8 XIST-201ENST00000416330 750 ntTSL 2 BASIC4.92□□□□□ -1.62
TRIM49D1C9J1S8 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
TRIM49D1C9J1S8 HNRNPA3P4-201ENST00000427514 803 ntBASIC4.92□□□□□ -1.62
TRIM49D1C9J1S8 PPIAP20-201ENST00000449839 135 ntBASIC4.92□□□□□ -1.62
TRIM49D1C9J1S8 OR2A3P-201ENST00000493774 953 ntBASIC4.92□□□□□ -1.62
TRIM49D1C9J1S8 RN7SL101P-201ENST00000496350 279 ntBASIC4.92□□□□□ -1.62
TRIM49D1C9J1S8 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC4.92□□□□□ -1.62
TRIM49D1C9J1S8 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC4.92□□□□□ -1.62
TRIM49D1C9J1S8 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC4.92□□□□□ -1.62
TRIM49D1C9J1S8 NOP10-202ENST00000557912 436 ntTSL 2 BASIC4.92□□□□□ -1.62
TRIM49D1C9J1S8 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC4.92□□□□□ -1.62
TRIM49D1C9J1S8 LINC01243-201ENST00000562065 721 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
TRIM49D1C9J1S8 EIF1P5-201ENST00000585002 234 ntBASIC4.92□□□□□ -1.62
TRIM49D1C9J1S8 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC4.92□□□□□ -1.62
TRIM49D1C9J1S8 LINC01862-201ENST00000593792 478 ntTSL 2 BASIC4.92□□□□□ -1.62
TRIM49D1C9J1S8 MIR6729-201ENST00000618194 65 ntBASIC4.92□□□□□ -1.62
TRIM49D1C9J1S8 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC4.92□□□□□ -1.62
TRIM49D1C9J1S8 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
TRIM49D1C9J1S8 AC087821.1-201ENST00000623639 567 ntBASIC4.92□□□□□ -1.62
TRIM49D1C9J1S8 LINC01708-202ENST00000634316 859 ntTSL 5 BASIC4.92□□□□□ -1.62
TRIM49D1C9J1S8 AL672167.1-203ENST00000641299 2975 ntBASIC4.92□□□□□ -1.62
TRIM49D1C9J1S8 AC133552.1-201ENST00000569988 4007 ntBASIC4.92□□□□□ -1.62
TRIM49D1C9J1S8 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
TRIM49D1C9J1S8 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC4.92□□□□□ -1.62
TRIM49D1C9J1S8 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
TRIM49D1C9J1S8 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC4.92□□□□□ -1.62
TRIM49D1C9J1S8 DHX9P1-201ENST00000436565 3076 ntBASIC4.92□□□□□ -1.62
TRIM49D1C9J1S8 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.92□□□□□ -1.62
TRIM49D1C9J1S8 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.92□□□□□ -1.62
TRIM49D1C9J1S8 AC020633.1-201ENST00000468439 2247 ntBASIC4.92□□□□□ -1.62
TRIM49D1C9J1S8 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC4.92□□□□□ -1.62
TRIM49D1C9J1S8 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
TRIM49D1C9J1S8 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC4.91□□□□□ -1.62
TRIM49D1C9J1S8 XKRY2-202ENST00000623874 1581 ntBASIC4.91□□□□□ -1.62
TRIM49D1C9J1S8 XKRY-202ENST00000624960 1581 ntBASIC4.91□□□□□ -1.62
TRIM49D1C9J1S8 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
TRIM49D1C9J1S8 OR4G1P-202ENST00000641173 1788 ntBASIC4.91□□□□□ -1.62
TRIM49D1C9J1S8 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC4.91□□□□□ -1.62
TRIM49D1C9J1S8 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
TRIM49D1C9J1S8 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC4.91□□□□□ -1.62
TRIM49D1C9J1S8 AC097461.1-201ENST00000568928 2821 ntBASIC4.91□□□□□ -1.62
TRIM49D1C9J1S8 LINC01620-202ENST00000372910 649 ntTSL 5 BASIC4.91□□□□□ -1.62
TRIM49D1C9J1S8 SNORA66-201ENST00000384792 133 ntBASIC4.91□□□□□ -1.62
TRIM49D1C9J1S8 U3.35-201ENST00000408405 208 ntBASIC4.91□□□□□ -1.62
TRIM49D1C9J1S8 RN7SKP126-201ENST00000411143 300 ntBASIC4.91□□□□□ -1.62
TRIM49D1C9J1S8 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC4.91□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms