Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC19.43■□□□□ 0.7
VPS9D1Q9Y2B5 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
VPS9D1Q9Y2B5 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
VPS9D1Q9Y2B5 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS9D1Q9Y2B5 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS9D1Q9Y2B5 AC116562.4-201ENST00000641316 2276 ntBASIC19.42■□□□□ 0.7
VPS9D1Q9Y2B5 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS9D1Q9Y2B5 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
VPS9D1Q9Y2B5 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
VPS9D1Q9Y2B5 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
VPS9D1Q9Y2B5 AC093484.2-201ENST00000580996 2166 ntBASIC19.42■□□□□ 0.7
VPS9D1Q9Y2B5 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS9D1Q9Y2B5 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC19.42■□□□□ 0.7
VPS9D1Q9Y2B5 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VPS9D1Q9Y2B5 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS9D1Q9Y2B5 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS9D1Q9Y2B5 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC19.42■□□□□ 0.7
VPS9D1Q9Y2B5 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC19.42■□□□□ 0.7
VPS9D1Q9Y2B5 UNC93B5-201ENST00000530315 699 ntBASIC19.42■□□□□ 0.7
VPS9D1Q9Y2B5 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
VPS9D1Q9Y2B5 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS9D1Q9Y2B5 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC19.42■□□□□ 0.7
VPS9D1Q9Y2B5 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS9D1Q9Y2B5 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
VPS9D1Q9Y2B5 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS9D1Q9Y2B5 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS9D1Q9Y2B5 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS9D1Q9Y2B5 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS9D1Q9Y2B5 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC19.41■□□□□ 0.7
VPS9D1Q9Y2B5 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
VPS9D1Q9Y2B5 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC19.41■□□□□ 0.7
VPS9D1Q9Y2B5 GOLGA6L3-201ENST00000507199 1679 ntBASIC19.41■□□□□ 0.7
VPS9D1Q9Y2B5 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS9D1Q9Y2B5 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS9D1Q9Y2B5 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS9D1Q9Y2B5 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC19.41■□□□□ 0.7
VPS9D1Q9Y2B5 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC19.41■□□□□ 0.7
VPS9D1Q9Y2B5 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
VPS9D1Q9Y2B5 NME1-207ENST00000480143 964 ntTSL 2 BASIC19.41■□□□□ 0.7
VPS9D1Q9Y2B5 PNN-205ENST00000556530 601 ntTSL 2 BASIC19.41■□□□□ 0.7
VPS9D1Q9Y2B5 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VPS9D1Q9Y2B5 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS9D1Q9Y2B5 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC19.41■□□□□ 0.7
VPS9D1Q9Y2B5 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS9D1Q9Y2B5 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS9D1Q9Y2B5 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS9D1Q9Y2B5 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS9D1Q9Y2B5 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC19.41■□□□□ 0.7
VPS9D1Q9Y2B5 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC19.41■□□□□ 0.7
VPS9D1Q9Y2B5 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS9D1Q9Y2B5 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
VPS9D1Q9Y2B5 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS9D1Q9Y2B5 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
VPS9D1Q9Y2B5 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS9D1Q9Y2B5 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS9D1Q9Y2B5 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VPS9D1Q9Y2B5 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS9D1Q9Y2B5 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS9D1Q9Y2B5 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS9D1Q9Y2B5 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS9D1Q9Y2B5 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
VPS9D1Q9Y2B5 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
VPS9D1Q9Y2B5 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS9D1Q9Y2B5 POM121L13P-201ENST00000422362 380 ntBASIC19.4■□□□□ 0.7
VPS9D1Q9Y2B5 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC19.4■□□□□ 0.7
VPS9D1Q9Y2B5 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC19.4■□□□□ 0.7
VPS9D1Q9Y2B5 EMC9-206ENST00000560403 872 ntTSL 2 BASIC19.4■□□□□ 0.7
VPS9D1Q9Y2B5 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
VPS9D1Q9Y2B5 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC19.4■□□□□ 0.7
VPS9D1Q9Y2B5 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC19.4■□□□□ 0.7
VPS9D1Q9Y2B5 AC005332.7-201ENST00000614046 2005 ntBASIC19.4■□□□□ 0.7
VPS9D1Q9Y2B5 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VPS9D1Q9Y2B5 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC19.4■□□□□ 0.7
VPS9D1Q9Y2B5 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VPS9D1Q9Y2B5 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VPS9D1Q9Y2B5 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS9D1Q9Y2B5 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.7
VPS9D1Q9Y2B5 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.7
VPS9D1Q9Y2B5 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS9D1Q9Y2B5 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS9D1Q9Y2B5 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS9D1Q9Y2B5 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS9D1Q9Y2B5 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS9D1Q9Y2B5 APTR-205ENST00000447009 902 ntTSL 2 BASIC19.39■□□□□ 0.69
VPS9D1Q9Y2B5 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC19.39■□□□□ 0.69
VPS9D1Q9Y2B5 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC19.39■□□□□ 0.69
VPS9D1Q9Y2B5 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
VPS9D1Q9Y2B5 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS9D1Q9Y2B5 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS9D1Q9Y2B5 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
VPS9D1Q9Y2B5 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
VPS9D1Q9Y2B5 TP73-202ENST00000354437 2140 ntTSL 5 BASIC19.39■□□□□ 0.69
VPS9D1Q9Y2B5 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VPS9D1Q9Y2B5 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS9D1Q9Y2B5 RNF165-205ENST00000588679 2904 ntBASIC19.38■□□□□ 0.69
VPS9D1Q9Y2B5 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS9D1Q9Y2B5 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS9D1Q9Y2B5 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS9D1Q9Y2B5 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS9D1Q9Y2B5 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms