Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CDH9Q9ULB4 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CDH9Q9ULB4 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CDH9Q9ULB4 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC20.69■□□□□ 0.9
CDH9Q9ULB4 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CDH9Q9ULB4 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CDH9Q9ULB4 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
CDH9Q9ULB4 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CDH9Q9ULB4 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CDH9Q9ULB4 AC004980.1-204ENST00000429707 299 ntBASIC20.69■□□□□ 0.9
CDH9Q9ULB4 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC20.69■□□□□ 0.9
CDH9Q9ULB4 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC20.69■□□□□ 0.9
CDH9Q9ULB4 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CDH9Q9ULB4 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC20.69■□□□□ 0.9
CDH9Q9ULB4 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC20.69■□□□□ 0.9
CDH9Q9ULB4 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC20.69■□□□□ 0.9
CDH9Q9ULB4 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC20.69■□□□□ 0.9
CDH9Q9ULB4 AC026271.3-201ENST00000571884 352 ntBASIC20.69■□□□□ 0.9
CDH9Q9ULB4 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC20.69■□□□□ 0.9
CDH9Q9ULB4 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CDH9Q9ULB4 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
CDH9Q9ULB4 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC20.69■□□□□ 0.9
CDH9Q9ULB4 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CDH9Q9ULB4 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CDH9Q9ULB4 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CDH9Q9ULB4 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CDH9Q9ULB4 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.69■□□□□ 0.9
CDH9Q9ULB4 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CDH9Q9ULB4 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
CDH9Q9ULB4 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CDH9Q9ULB4 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
CDH9Q9ULB4 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
CDH9Q9ULB4 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CDH9Q9ULB4 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CDH9Q9ULB4 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
CDH9Q9ULB4 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC20.68■□□□□ 0.9
CDH9Q9ULB4 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CDH9Q9ULB4 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CDH9Q9ULB4 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC20.68■□□□□ 0.9
CDH9Q9ULB4 AC116562.2-201ENST00000507042 360 ntBASIC20.68■□□□□ 0.9
CDH9Q9ULB4 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
CDH9Q9ULB4 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC20.68■□□□□ 0.9
CDH9Q9ULB4 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC20.68■□□□□ 0.9
CDH9Q9ULB4 ABBA01031674.1-201ENST00000635145 728 ntBASIC20.68■□□□□ 0.9
CDH9Q9ULB4 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
CDH9Q9ULB4 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CDH9Q9ULB4 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC20.68■□□□□ 0.9
CDH9Q9ULB4 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CDH9Q9ULB4 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
CDH9Q9ULB4 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CDH9Q9ULB4 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC20.68■□□□□ 0.9
CDH9Q9ULB4 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC20.68■□□□□ 0.9
CDH9Q9ULB4 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
CDH9Q9ULB4 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CDH9Q9ULB4 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC20.67■□□□□ 0.9
CDH9Q9ULB4 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
CDH9Q9ULB4 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CDH9Q9ULB4 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CDH9Q9ULB4 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC20.67■□□□□ 0.9
CDH9Q9ULB4 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC20.67■□□□□ 0.9
CDH9Q9ULB4 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC20.67■□□□□ 0.9
CDH9Q9ULB4 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC20.67■□□□□ 0.9
CDH9Q9ULB4 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
CDH9Q9ULB4 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CDH9Q9ULB4 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC20.67■□□□□ 0.9
CDH9Q9ULB4 REXO1L10P-201ENST00000615707 1290 ntBASIC20.67■□□□□ 0.9
CDH9Q9ULB4 REXO1L12P-201ENST00000622156 912 ntBASIC20.67■□□□□ 0.9
CDH9Q9ULB4 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.67■□□□□ 0.9
CDH9Q9ULB4 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CDH9Q9ULB4 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC20.67■□□□□ 0.9
CDH9Q9ULB4 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
CDH9Q9ULB4 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CDH9Q9ULB4 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CDH9Q9ULB4 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CDH9Q9ULB4 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDH9Q9ULB4 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
CDH9Q9ULB4 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.66■□□□□ 0.9
CDH9Q9ULB4 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
CDH9Q9ULB4 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
CDH9Q9ULB4 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDH9Q9ULB4 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
CDH9Q9ULB4 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDH9Q9ULB4 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC20.66■□□□□ 0.9
CDH9Q9ULB4 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC20.66■□□□□ 0.9
CDH9Q9ULB4 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDH9Q9ULB4 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
CDH9Q9ULB4 GXYLT1P3-201ENST00000453058 1193 ntBASIC20.66■□□□□ 0.9
CDH9Q9ULB4 TSPY15P-201ENST00000457163 923 ntBASIC20.66■□□□□ 0.9
CDH9Q9ULB4 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC20.66■□□□□ 0.9
CDH9Q9ULB4 BX088651.1-201ENST00000540551 451 ntBASIC20.66■□□□□ 0.9
CDH9Q9ULB4 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDH9Q9ULB4 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDH9Q9ULB4 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CDH9Q9ULB4 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CDH9Q9ULB4 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.66■□□□□ 0.9
CDH9Q9ULB4 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDH9Q9ULB4 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
CDH9Q9ULB4 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CDH9Q9ULB4 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDH9Q9ULB4 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 65.9 ms