Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
LIMD1Q9UGP4 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.39■□□□□ 0.85
LIMD1Q9UGP4 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
LIMD1Q9UGP4 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
LIMD1Q9UGP4 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
LIMD1Q9UGP4 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LIMD1Q9UGP4 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
LIMD1Q9UGP4 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC20.38■□□□□ 0.85
LIMD1Q9UGP4 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.38■□□□□ 0.85
LIMD1Q9UGP4 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
LIMD1Q9UGP4 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC20.38■□□□□ 0.85
LIMD1Q9UGP4 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
LIMD1Q9UGP4 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
LIMD1Q9UGP4 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC20.38■□□□□ 0.85
LIMD1Q9UGP4 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
LIMD1Q9UGP4 PCED1CP-201ENST00000419887 785 ntBASIC20.38■□□□□ 0.85
LIMD1Q9UGP4 TUBB8P6-201ENST00000436895 1288 ntBASIC20.38■□□□□ 0.85
LIMD1Q9UGP4 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC20.38■□□□□ 0.85
LIMD1Q9UGP4 AC008040.2-201ENST00000461049 708 ntBASIC20.38■□□□□ 0.85
LIMD1Q9UGP4 COX11P1-201ENST00000489116 835 ntBASIC20.38■□□□□ 0.85
LIMD1Q9UGP4 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
LIMD1Q9UGP4 CD320-202ENST00000537716 1119 ntTSL 2 BASIC20.38■□□□□ 0.85
LIMD1Q9UGP4 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
LIMD1Q9UGP4 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
LIMD1Q9UGP4 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC20.38■□□□□ 0.85
LIMD1Q9UGP4 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
LIMD1Q9UGP4 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC20.38■□□□□ 0.85
LIMD1Q9UGP4 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC20.38■□□□□ 0.85
LIMD1Q9UGP4 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
LIMD1Q9UGP4 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
LIMD1Q9UGP4 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC20.38■□□□□ 0.85
LIMD1Q9UGP4 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
LIMD1Q9UGP4 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC20.38■□□□□ 0.85
LIMD1Q9UGP4 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LIMD1Q9UGP4 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC20.38■□□□□ 0.85
LIMD1Q9UGP4 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
LIMD1Q9UGP4 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
LIMD1Q9UGP4 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC20.37■□□□□ 0.85
LIMD1Q9UGP4 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
LIMD1Q9UGP4 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
LIMD1Q9UGP4 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
LIMD1Q9UGP4 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LIMD1Q9UGP4 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
LIMD1Q9UGP4 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.37■□□□□ 0.85
LIMD1Q9UGP4 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LIMD1Q9UGP4 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LIMD1Q9UGP4 FAM207BP-201ENST00000447172 505 ntBASIC20.37■□□□□ 0.85
LIMD1Q9UGP4 AC011298.2-201ENST00000617989 482 ntBASIC20.37■□□□□ 0.85
LIMD1Q9UGP4 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LIMD1Q9UGP4 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
LIMD1Q9UGP4 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
LIMD1Q9UGP4 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.37■□□□□ 0.85
LIMD1Q9UGP4 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
LIMD1Q9UGP4 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
LIMD1Q9UGP4 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC20.37■□□□□ 0.85
LIMD1Q9UGP4 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
LIMD1Q9UGP4 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
LIMD1Q9UGP4 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.36■□□□□ 0.85
LIMD1Q9UGP4 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.36■□□□□ 0.85
LIMD1Q9UGP4 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC20.36■□□□□ 0.85
LIMD1Q9UGP4 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.36■□□□□ 0.85
LIMD1Q9UGP4 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
LIMD1Q9UGP4 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.36■□□□□ 0.85
LIMD1Q9UGP4 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
LIMD1Q9UGP4 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LIMD1Q9UGP4 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LIMD1Q9UGP4 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LIMD1Q9UGP4 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
LIMD1Q9UGP4 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LIMD1Q9UGP4 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
LIMD1Q9UGP4 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC20.36■□□□□ 0.85
LIMD1Q9UGP4 MFAP1P1-201ENST00000442257 1255 ntBASIC20.36■□□□□ 0.85
LIMD1Q9UGP4 CCR12P-201ENST00000446203 998 ntBASIC20.36■□□□□ 0.85
LIMD1Q9UGP4 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC20.36■□□□□ 0.85
LIMD1Q9UGP4 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
LIMD1Q9UGP4 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC20.36■□□□□ 0.85
LIMD1Q9UGP4 KRT18P16-201ENST00000510337 1294 ntBASIC20.36■□□□□ 0.85
LIMD1Q9UGP4 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC20.36■□□□□ 0.85
LIMD1Q9UGP4 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC20.36■□□□□ 0.85
LIMD1Q9UGP4 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC20.36■□□□□ 0.85
LIMD1Q9UGP4 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC20.36■□□□□ 0.85
LIMD1Q9UGP4 AC011558.1-201ENST00000623459 338 ntBASIC20.36■□□□□ 0.85
LIMD1Q9UGP4 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC20.36■□□□□ 0.85
LIMD1Q9UGP4 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
LIMD1Q9UGP4 RCC2P6-201ENST00000526625 1557 ntBASIC20.36■□□□□ 0.85
LIMD1Q9UGP4 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC20.36■□□□□ 0.85
LIMD1Q9UGP4 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LIMD1Q9UGP4 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
LIMD1Q9UGP4 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LIMD1Q9UGP4 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
LIMD1Q9UGP4 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
LIMD1Q9UGP4 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LIMD1Q9UGP4 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
LIMD1Q9UGP4 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
LIMD1Q9UGP4 TFP1-202ENST00000475455 1573 ntBASIC20.35■□□□□ 0.85
LIMD1Q9UGP4 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
LIMD1Q9UGP4 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LIMD1Q9UGP4 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC20.35■□□□□ 0.85
LIMD1Q9UGP4 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LIMD1Q9UGP4 YBX1P10-201ENST00000444752 975 ntBASIC20.35■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 62.5 ms