Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLCF1Q9UBD9 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLCF1Q9UBD9 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLCF1Q9UBD9 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLCF1Q9UBD9 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
CLCF1Q9UBD9 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.38
CLCF1Q9UBD9 EFS-203ENST00000429593 2610 ntTSL 2 BASIC17.39■□□□□ 0.37
CLCF1Q9UBD9 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLCF1Q9UBD9 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CLCF1Q9UBD9 MESTP1-201ENST00000404287 994 ntBASIC17.39■□□□□ 0.37
CLCF1Q9UBD9 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CLCF1Q9UBD9 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CLCF1Q9UBD9 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC17.39■□□□□ 0.37
CLCF1Q9UBD9 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC17.39■□□□□ 0.37
CLCF1Q9UBD9 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CLCF1Q9UBD9 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC17.39■□□□□ 0.37
CLCF1Q9UBD9 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC17.39■□□□□ 0.37
CLCF1Q9UBD9 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC17.39■□□□□ 0.37
CLCF1Q9UBD9 AC131212.4-201ENST00000623606 975 ntBASIC17.39■□□□□ 0.37
CLCF1Q9UBD9 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLCF1Q9UBD9 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
CLCF1Q9UBD9 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLCF1Q9UBD9 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLCF1Q9UBD9 AC099778.1-201ENST00000568593 1911 ntBASIC17.39■□□□□ 0.37
CLCF1Q9UBD9 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLCF1Q9UBD9 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLCF1Q9UBD9 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC17.38■□□□□ 0.37
CLCF1Q9UBD9 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CLCF1Q9UBD9 AL391422.3-201ENST00000603791 2761 ntBASIC17.38■□□□□ 0.37
CLCF1Q9UBD9 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLCF1Q9UBD9 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CLCF1Q9UBD9 MMP23A-201ENST00000234610 1017 ntBASIC17.38■□□□□ 0.37
CLCF1Q9UBD9 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLCF1Q9UBD9 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CLCF1Q9UBD9 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
CLCF1Q9UBD9 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLCF1Q9UBD9 NME1-207ENST00000480143 964 ntTSL 2 BASIC17.38■□□□□ 0.37
CLCF1Q9UBD9 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC17.38■□□□□ 0.37
CLCF1Q9UBD9 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC17.38■□□□□ 0.37
CLCF1Q9UBD9 AC012306.2-201ENST00000609350 630 ntBASIC17.38■□□□□ 0.37
CLCF1Q9UBD9 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC17.38■□□□□ 0.37
CLCF1Q9UBD9 AC133561.5-201ENST00000635547 218 ntBASIC17.38■□□□□ 0.37
CLCF1Q9UBD9 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLCF1Q9UBD9 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLCF1Q9UBD9 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLCF1Q9UBD9 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC17.38■□□□□ 0.37
CLCF1Q9UBD9 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
CLCF1Q9UBD9 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLCF1Q9UBD9 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CLCF1Q9UBD9 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLCF1Q9UBD9 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC17.38■□□□□ 0.37
CLCF1Q9UBD9 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLCF1Q9UBD9 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLCF1Q9UBD9 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CLCF1Q9UBD9 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLCF1Q9UBD9 FSCN1P1-201ENST00000568912 1481 ntBASIC17.37■□□□□ 0.37
CLCF1Q9UBD9 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC17.37■□□□□ 0.37
CLCF1Q9UBD9 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLCF1Q9UBD9 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLCF1Q9UBD9 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CLCF1Q9UBD9 B3GAT3P1-201ENST00000471720 806 ntBASIC17.37■□□□□ 0.37
CLCF1Q9UBD9 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CLCF1Q9UBD9 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLCF1Q9UBD9 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC17.37■□□□□ 0.37
CLCF1Q9UBD9 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
CLCF1Q9UBD9 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC17.37■□□□□ 0.37
CLCF1Q9UBD9 MIR6786-201ENST00000616843 113 ntBASIC17.37■□□□□ 0.37
CLCF1Q9UBD9 AC097493.4-201ENST00000641197 219 ntBASIC17.37■□□□□ 0.37
CLCF1Q9UBD9 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLCF1Q9UBD9 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLCF1Q9UBD9 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC17.37■□□□□ 0.37
CLCF1Q9UBD9 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC17.37■□□□□ 0.37
CLCF1Q9UBD9 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLCF1Q9UBD9 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLCF1Q9UBD9 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC17.37■□□□□ 0.37
CLCF1Q9UBD9 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
CLCF1Q9UBD9 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
CLCF1Q9UBD9 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC17.36■□□□□ 0.37
CLCF1Q9UBD9 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CLCF1Q9UBD9 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLCF1Q9UBD9 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC17.36■□□□□ 0.37
CLCF1Q9UBD9 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC17.36■□□□□ 0.37
CLCF1Q9UBD9 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLCF1Q9UBD9 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
CLCF1Q9UBD9 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CLCF1Q9UBD9 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLCF1Q9UBD9 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLCF1Q9UBD9 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLCF1Q9UBD9 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLCF1Q9UBD9 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
CLCF1Q9UBD9 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
CLCF1Q9UBD9 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLCF1Q9UBD9 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
CLCF1Q9UBD9 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
CLCF1Q9UBD9 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC17.36■□□□□ 0.37
CLCF1Q9UBD9 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC17.36■□□□□ 0.37
CLCF1Q9UBD9 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLCF1Q9UBD9 GLDC-219ENST00000640208 420 ntTSL 2 BASIC17.36■□□□□ 0.37
CLCF1Q9UBD9 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLCF1Q9UBD9 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms