Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
BRF2Q9HAW0 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
BRF2Q9HAW0 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC18.69■□□□□ 0.58
BRF2Q9HAW0 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC18.69■□□□□ 0.58
BRF2Q9HAW0 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.69■□□□□ 0.58
BRF2Q9HAW0 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC18.69■□□□□ 0.58
BRF2Q9HAW0 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
BRF2Q9HAW0 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
BRF2Q9HAW0 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
BRF2Q9HAW0 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
BRF2Q9HAW0 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
BRF2Q9HAW0 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
BRF2Q9HAW0 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
BRF2Q9HAW0 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
BRF2Q9HAW0 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
BRF2Q9HAW0 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
BRF2Q9HAW0 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
BRF2Q9HAW0 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
BRF2Q9HAW0 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
BRF2Q9HAW0 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 PNN-205ENST00000556530 601 ntTSL 2 BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 KLF2-202ENST00000592003 564 ntTSL 3 BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
BRF2Q9HAW0 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
BRF2Q9HAW0 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
BRF2Q9HAW0 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
BRF2Q9HAW0 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC18.67■□□□□ 0.58
BRF2Q9HAW0 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
BRF2Q9HAW0 ZNF815P-204ENST00000434898 1737 ntBASIC18.67■□□□□ 0.58
BRF2Q9HAW0 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
BRF2Q9HAW0 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC18.67■□□□□ 0.58
BRF2Q9HAW0 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC18.67■□□□□ 0.58
BRF2Q9HAW0 UNC93B4-201ENST00000505679 747 ntBASIC18.67■□□□□ 0.58
BRF2Q9HAW0 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
BRF2Q9HAW0 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
BRF2Q9HAW0 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC18.67■□□□□ 0.58
BRF2Q9HAW0 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
BRF2Q9HAW0 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.67■□□□□ 0.58
BRF2Q9HAW0 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC18.67■□□□□ 0.58
BRF2Q9HAW0 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
BRF2Q9HAW0 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC18.67■□□□□ 0.58
BRF2Q9HAW0 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
BRF2Q9HAW0 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.67■□□□□ 0.58
BRF2Q9HAW0 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 KRT8P8-201ENST00000434750 1448 ntBASIC18.66■□□□□ 0.58
BRF2Q9HAW0 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 AL355802.2-201ENST00000402069 882 ntBASIC18.66■□□□□ 0.58
BRF2Q9HAW0 HLA-L-209ENST00000420110 1011 ntBASIC18.66■□□□□ 0.58
BRF2Q9HAW0 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms