Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
BRF2Q9HAW0 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
BRF2Q9HAW0 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC18.69■□□□□ 0.58
BRF2Q9HAW0 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC18.69■□□□□ 0.58
BRF2Q9HAW0 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.69■□□□□ 0.58
BRF2Q9HAW0 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC18.69■□□□□ 0.58
BRF2Q9HAW0 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
BRF2Q9HAW0 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
BRF2Q9HAW0 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
BRF2Q9HAW0 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
BRF2Q9HAW0 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
BRF2Q9HAW0 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
BRF2Q9HAW0 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
BRF2Q9HAW0 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
BRF2Q9HAW0 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
BRF2Q9HAW0 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
BRF2Q9HAW0 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
BRF2Q9HAW0 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
BRF2Q9HAW0 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
BRF2Q9HAW0 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 PNN-205ENST00000556530 601 ntTSL 2 BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 KLF2-202ENST00000592003 564 ntTSL 3 BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.68■□□□□ 0.58
BRF2Q9HAW0 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
BRF2Q9HAW0 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
BRF2Q9HAW0 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
BRF2Q9HAW0 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
BRF2Q9HAW0 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC18.67■□□□□ 0.58
BRF2Q9HAW0 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
BRF2Q9HAW0 ZNF815P-204ENST00000434898 1737 ntBASIC18.67■□□□□ 0.58
BRF2Q9HAW0 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
BRF2Q9HAW0 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC18.67■□□□□ 0.58
BRF2Q9HAW0 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC18.67■□□□□ 0.58
BRF2Q9HAW0 UNC93B4-201ENST00000505679 747 ntBASIC18.67■□□□□ 0.58
BRF2Q9HAW0 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
BRF2Q9HAW0 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
BRF2Q9HAW0 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC18.67■□□□□ 0.58
BRF2Q9HAW0 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
BRF2Q9HAW0 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.67■□□□□ 0.58
BRF2Q9HAW0 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC18.67■□□□□ 0.58
BRF2Q9HAW0 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
BRF2Q9HAW0 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC18.67■□□□□ 0.58
BRF2Q9HAW0 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
BRF2Q9HAW0 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.67■□□□□ 0.58
BRF2Q9HAW0 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 KRT8P8-201ENST00000434750 1448 ntBASIC18.66■□□□□ 0.58
BRF2Q9HAW0 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 AL355802.2-201ENST00000402069 882 ntBASIC18.66■□□□□ 0.58
BRF2Q9HAW0 HLA-L-209ENST00000420110 1011 ntBASIC18.66■□□□□ 0.58
BRF2Q9HAW0 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms