Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM56Q9BRZ2 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC19.9■□□□□ 0.78
TRIM56Q9BRZ2 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
TRIM56Q9BRZ2 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC19.9■□□□□ 0.78
TRIM56Q9BRZ2 NXN-202ENST00000537628 1340 ntTSL 3 BASIC19.9■□□□□ 0.78
TRIM56Q9BRZ2 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM56Q9BRZ2 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
TRIM56Q9BRZ2 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM56Q9BRZ2 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC19.9■□□□□ 0.78
TRIM56Q9BRZ2 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC19.9■□□□□ 0.78
TRIM56Q9BRZ2 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM56Q9BRZ2 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC19.9■□□□□ 0.78
TRIM56Q9BRZ2 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
TRIM56Q9BRZ2 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC19.9■□□□□ 0.78
TRIM56Q9BRZ2 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM56Q9BRZ2 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM56Q9BRZ2 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC19.9■□□□□ 0.78
TRIM56Q9BRZ2 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM56Q9BRZ2 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM56Q9BRZ2 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM56Q9BRZ2 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM56Q9BRZ2 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
TRIM56Q9BRZ2 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM56Q9BRZ2 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM56Q9BRZ2 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM56Q9BRZ2 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM56Q9BRZ2 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC19.89■□□□□ 0.77
TRIM56Q9BRZ2 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM56Q9BRZ2 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM56Q9BRZ2 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC19.89■□□□□ 0.77
TRIM56Q9BRZ2 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM56Q9BRZ2 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
TRIM56Q9BRZ2 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC19.89■□□□□ 0.77
TRIM56Q9BRZ2 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC19.89■□□□□ 0.77
TRIM56Q9BRZ2 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.89■□□□□ 0.77
TRIM56Q9BRZ2 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM56Q9BRZ2 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC19.88■□□□□ 0.77
TRIM56Q9BRZ2 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
TRIM56Q9BRZ2 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM56Q9BRZ2 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM56Q9BRZ2 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM56Q9BRZ2 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
TRIM56Q9BRZ2 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC19.88■□□□□ 0.77
TRIM56Q9BRZ2 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM56Q9BRZ2 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM56Q9BRZ2 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM56Q9BRZ2 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
TRIM56Q9BRZ2 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC19.88■□□□□ 0.77
TRIM56Q9BRZ2 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM56Q9BRZ2 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM56Q9BRZ2 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM56Q9BRZ2 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
TRIM56Q9BRZ2 HLA-L-209ENST00000420110 1011 ntBASIC19.88■□□□□ 0.77
TRIM56Q9BRZ2 DENND3-207ENST00000518347 850 ntTSL 2 BASIC19.88■□□□□ 0.77
TRIM56Q9BRZ2 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM56Q9BRZ2 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM56Q9BRZ2 TK2-208ENST00000545043 1120 ntTSL 2 BASIC19.88■□□□□ 0.77
TRIM56Q9BRZ2 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC19.88■□□□□ 0.77
TRIM56Q9BRZ2 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM56Q9BRZ2 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
TRIM56Q9BRZ2 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC19.88■□□□□ 0.77
TRIM56Q9BRZ2 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM56Q9BRZ2 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC19.87■□□□□ 0.77
TRIM56Q9BRZ2 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM56Q9BRZ2 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM56Q9BRZ2 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC19.87■□□□□ 0.77
TRIM56Q9BRZ2 AL032819.2-201ENST00000624543 2162 ntBASIC19.87■□□□□ 0.77
TRIM56Q9BRZ2 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
TRIM56Q9BRZ2 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM56Q9BRZ2 MIPEPP3-201ENST00000412105 444 ntBASIC19.87■□□□□ 0.77
TRIM56Q9BRZ2 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC19.87■□□□□ 0.77
TRIM56Q9BRZ2 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC19.87■□□□□ 0.77
TRIM56Q9BRZ2 WT1-AS_3.1-201ENST00000613262 234 ntBASIC19.87■□□□□ 0.77
TRIM56Q9BRZ2 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM56Q9BRZ2 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC19.87■□□□□ 0.77
TRIM56Q9BRZ2 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM56Q9BRZ2 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM56Q9BRZ2 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM56Q9BRZ2 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM56Q9BRZ2 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
TRIM56Q9BRZ2 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC19.86■□□□□ 0.77
TRIM56Q9BRZ2 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
TRIM56Q9BRZ2 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
TRIM56Q9BRZ2 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC19.86■□□□□ 0.77
TRIM56Q9BRZ2 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRIM56Q9BRZ2 AC004408.2-201ENST00000623613 2777 ntBASIC19.86■□□□□ 0.77
TRIM56Q9BRZ2 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC19.86■□□□□ 0.77
TRIM56Q9BRZ2 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRIM56Q9BRZ2 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
TRIM56Q9BRZ2 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRIM56Q9BRZ2 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRIM56Q9BRZ2 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
TRIM56Q9BRZ2 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
TRIM56Q9BRZ2 GUSBP6-202ENST00000438529 1198 ntBASIC19.86■□□□□ 0.77
TRIM56Q9BRZ2 HES2-205ENST00000487437 968 ntTSL 3 BASIC19.86■□□□□ 0.77
TRIM56Q9BRZ2 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC19.86■□□□□ 0.77
TRIM56Q9BRZ2 OAS3-207ENST00000551007 998 ntTSL 2 BASIC19.86■□□□□ 0.77
TRIM56Q9BRZ2 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.86■□□□□ 0.77
TRIM56Q9BRZ2 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
TRIM56Q9BRZ2 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms