Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL12A1Q99715 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL12A1Q99715 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL12A1Q99715 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL12A1Q99715 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC17.15■□□□□ 0.34
COL12A1Q99715 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC17.15■□□□□ 0.34
COL12A1Q99715 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL12A1Q99715 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL12A1Q99715 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL12A1Q99715 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL12A1Q99715 AC092597.1-201ENST00000487352 616 ntBASIC17.15■□□□□ 0.34
COL12A1Q99715 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC17.15■□□□□ 0.34
COL12A1Q99715 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC17.15■□□□□ 0.34
COL12A1Q99715 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
COL12A1Q99715 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
COL12A1Q99715 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL12A1Q99715 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL12A1Q99715 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL12A1Q99715 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC17.15■□□□□ 0.34
COL12A1Q99715 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC17.15■□□□□ 0.34
COL12A1Q99715 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
COL12A1Q99715 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
COL12A1Q99715 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL12A1Q99715 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC17.14■□□□□ 0.33
COL12A1Q99715 GOLGA2P6-201ENST00000340929 2049 ntBASIC17.14■□□□□ 0.33
COL12A1Q99715 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL12A1Q99715 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL12A1Q99715 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL12A1Q99715 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC17.14■□□□□ 0.33
COL12A1Q99715 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL12A1Q99715 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC17.14■□□□□ 0.33
COL12A1Q99715 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC17.14■□□□□ 0.33
COL12A1Q99715 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL12A1Q99715 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL12A1Q99715 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL12A1Q99715 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL12A1Q99715 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL12A1Q99715 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL12A1Q99715 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
COL12A1Q99715 AC112907.2-201ENST00000448639 330 ntBASIC17.14■□□□□ 0.33
COL12A1Q99715 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL12A1Q99715 VPS51-217ENST00000639871 243 ntTSL 5 BASIC17.14■□□□□ 0.33
COL12A1Q99715 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
COL12A1Q99715 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL12A1Q99715 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
COL12A1Q99715 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC17.13■□□□□ 0.33
COL12A1Q99715 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL12A1Q99715 HBZP1-201ENST00000354915 429 ntBASIC17.13■□□□□ 0.33
COL12A1Q99715 Z85996.1-201ENST00000494644 937 ntBASIC17.13■□□□□ 0.33
COL12A1Q99715 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC17.13■□□□□ 0.33
COL12A1Q99715 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC17.13■□□□□ 0.33
COL12A1Q99715 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL12A1Q99715 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL12A1Q99715 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC17.13■□□□□ 0.33
COL12A1Q99715 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC17.13■□□□□ 0.33
COL12A1Q99715 AP003041.3-201ENST00000527151 707 ntBASIC17.13■□□□□ 0.33
COL12A1Q99715 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL12A1Q99715 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
COL12A1Q99715 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC17.13■□□□□ 0.33
COL12A1Q99715 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL12A1Q99715 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC17.13■□□□□ 0.33
COL12A1Q99715 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL12A1Q99715 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL12A1Q99715 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL12A1Q99715 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC17.13■□□□□ 0.33
COL12A1Q99715 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL12A1Q99715 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
COL12A1Q99715 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
COL12A1Q99715 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL12A1Q99715 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL12A1Q99715 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC17.12■□□□□ 0.33
COL12A1Q99715 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL12A1Q99715 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC17.12■□□□□ 0.33
COL12A1Q99715 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC17.12■□□□□ 0.33
COL12A1Q99715 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC17.12■□□□□ 0.33
COL12A1Q99715 MPI-205ENST00000562606 1052 ntTSL 3 BASIC17.12■□□□□ 0.33
COL12A1Q99715 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
COL12A1Q99715 AC055717.3-201ENST00000622967 595 ntBASIC17.12■□□□□ 0.33
COL12A1Q99715 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL12A1Q99715 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC17.12■□□□□ 0.33
COL12A1Q99715 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL12A1Q99715 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL12A1Q99715 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL12A1Q99715 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL12A1Q99715 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC17.12■□□□□ 0.33
COL12A1Q99715 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL12A1Q99715 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL12A1Q99715 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
COL12A1Q99715 AL645929.1-201ENST00000420084 975 ntBASIC17.12■□□□□ 0.33
COL12A1Q99715 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC17.12■□□□□ 0.33
COL12A1Q99715 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC17.12■□□□□ 0.33
COL12A1Q99715 NEK4P2-201ENST00000580004 1012 ntBASIC17.12■□□□□ 0.33
COL12A1Q99715 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
COL12A1Q99715 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL12A1Q99715 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL12A1Q99715 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL12A1Q99715 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL12A1Q99715 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL12A1Q99715 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL12A1Q99715 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 179.2 ms