Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDX2Q99626 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
CDX2Q99626 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC20.55■□□□□ 0.88
CDX2Q99626 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC20.55■□□□□ 0.88
CDX2Q99626 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC20.55■□□□□ 0.88
CDX2Q99626 LINC00265-3P-201ENST00000447588 903 ntBASIC20.55■□□□□ 0.88
CDX2Q99626 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC20.55■□□□□ 0.88
CDX2Q99626 KRT18P58-201ENST00000527480 1120 ntBASIC20.55■□□□□ 0.88
CDX2Q99626 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDX2Q99626 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC20.55■□□□□ 0.88
CDX2Q99626 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDX2Q99626 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDX2Q99626 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CDX2Q99626 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
CDX2Q99626 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDX2Q99626 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CDX2Q99626 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDX2Q99626 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDX2Q99626 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC20.54■□□□□ 0.88
CDX2Q99626 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
CDX2Q99626 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CDX2Q99626 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC20.54■□□□□ 0.88
CDX2Q99626 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CDX2Q99626 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CDX2Q99626 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDX2Q99626 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC20.54■□□□□ 0.88
CDX2Q99626 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDX2Q99626 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CDX2Q99626 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDX2Q99626 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDX2Q99626 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDX2Q99626 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.53■□□□□ 0.88
CDX2Q99626 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDX2Q99626 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDX2Q99626 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDX2Q99626 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CDX2Q99626 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
CDX2Q99626 GLRB-205ENST00000512619 728 ntTSL 3 BASIC20.53■□□□□ 0.88
CDX2Q99626 SLC25A1P1-201ENST00000528351 927 ntBASIC20.53■□□□□ 0.88
CDX2Q99626 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC20.53■□□□□ 0.88
CDX2Q99626 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
CDX2Q99626 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC20.53■□□□□ 0.88
CDX2Q99626 TPSP2-201ENST00000561760 610 ntBASIC20.53■□□□□ 0.88
CDX2Q99626 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
CDX2Q99626 AL139424.1-201ENST00000607572 797 ntBASIC20.53■□□□□ 0.88
CDX2Q99626 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC20.53■□□□□ 0.88
CDX2Q99626 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC20.53■□□□□ 0.88
CDX2Q99626 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC20.53■□□□□ 0.88
CDX2Q99626 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CDX2Q99626 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.53■□□□□ 0.88
CDX2Q99626 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC20.53■□□□□ 0.88
CDX2Q99626 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC20.53■□□□□ 0.88
CDX2Q99626 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDX2Q99626 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDX2Q99626 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC20.53■□□□□ 0.88
CDX2Q99626 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CDX2Q99626 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CDX2Q99626 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.52■□□□□ 0.88
CDX2Q99626 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC20.52■□□□□ 0.88
CDX2Q99626 DFFB-203ENST00000341385 572 ntTSL 5 BASIC20.52■□□□□ 0.88
CDX2Q99626 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC20.52■□□□□ 0.88
CDX2Q99626 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CDX2Q99626 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
CDX2Q99626 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
CDX2Q99626 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CDX2Q99626 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.52■□□□□ 0.88
CDX2Q99626 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CDX2Q99626 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC20.52■□□□□ 0.87
CDX2Q99626 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDX2Q99626 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC20.51■□□□□ 0.87
CDX2Q99626 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CDX2Q99626 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDX2Q99626 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDX2Q99626 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDX2Q99626 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CDX2Q99626 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
CDX2Q99626 GGCT-205ENST00000409436 954 ntTSL 3 BASIC20.51■□□□□ 0.87
CDX2Q99626 DRAXINP1-201ENST00000437611 948 ntBASIC20.51■□□□□ 0.87
CDX2Q99626 AC034232.1-201ENST00000506026 1064 ntBASIC20.51■□□□□ 0.87
CDX2Q99626 POLD2P1-201ENST00000511220 997 ntBASIC20.51■□□□□ 0.87
CDX2Q99626 TPM1-218ENST00000559281 851 ntTSL 5 BASIC20.51■□□□□ 0.87
CDX2Q99626 AC012615.1-201ENST00000565797 1299 ntBASIC20.51■□□□□ 0.87
CDX2Q99626 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC20.51■□□□□ 0.87
CDX2Q99626 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.51■□□□□ 0.87
CDX2Q99626 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CDX2Q99626 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CDX2Q99626 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDX2Q99626 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDX2Q99626 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CDX2Q99626 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CDX2Q99626 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDX2Q99626 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDX2Q99626 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC20.5■□□□□ 0.87
CDX2Q99626 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC20.5■□□□□ 0.87
CDX2Q99626 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CDX2Q99626 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC20.5■□□□□ 0.87
CDX2Q99626 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC20.5■□□□□ 0.87
CDX2Q99626 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC20.5■□□□□ 0.87
CDX2Q99626 CIB2-208ENST00000560618 804 ntTSL 2 BASIC20.5■□□□□ 0.87
CDX2Q99626 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms