Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC19.42■□□□□ 0.7
VPS35Q96QK1 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC19.42■□□□□ 0.7
VPS35Q96QK1 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS35Q96QK1 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
VPS35Q96QK1 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
VPS35Q96QK1 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS35Q96QK1 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS35Q96QK1 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS35Q96QK1 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VPS35Q96QK1 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC19.41■□□□□ 0.7
VPS35Q96QK1 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VPS35Q96QK1 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS35Q96QK1 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VPS35Q96QK1 RARRES2P10-201ENST00000564312 460 ntBASIC19.41■□□□□ 0.7
VPS35Q96QK1 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
VPS35Q96QK1 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC19.41■□□□□ 0.7
VPS35Q96QK1 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC19.41■□□□□ 0.7
VPS35Q96QK1 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS35Q96QK1 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VPS35Q96QK1 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC19.41■□□□□ 0.7
VPS35Q96QK1 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC19.41■□□□□ 0.7
VPS35Q96QK1 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS35Q96QK1 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
VPS35Q96QK1 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.41■□□□□ 0.7
VPS35Q96QK1 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
VPS35Q96QK1 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
VPS35Q96QK1 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
VPS35Q96QK1 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS35Q96QK1 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS35Q96QK1 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS35Q96QK1 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC19.4■□□□□ 0.7
VPS35Q96QK1 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
VPS35Q96QK1 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS35Q96QK1 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
VPS35Q96QK1 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
VPS35Q96QK1 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS35Q96QK1 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VPS35Q96QK1 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC19.4■□□□□ 0.7
VPS35Q96QK1 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC19.4■□□□□ 0.7
VPS35Q96QK1 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VPS35Q96QK1 C1QL1P1-201ENST00000568105 661 ntBASIC19.4■□□□□ 0.7
VPS35Q96QK1 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC19.4■□□□□ 0.7
VPS35Q96QK1 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS35Q96QK1 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC19.4■□□□□ 0.7
VPS35Q96QK1 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC19.4■□□□□ 0.7
VPS35Q96QK1 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
VPS35Q96QK1 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
VPS35Q96QK1 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
VPS35Q96QK1 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VPS35Q96QK1 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VPS35Q96QK1 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS35Q96QK1 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.7
VPS35Q96QK1 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.7
VPS35Q96QK1 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
VPS35Q96QK1 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.39■□□□□ 0.7
VPS35Q96QK1 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
VPS35Q96QK1 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC19.39■□□□□ 0.7
VPS35Q96QK1 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS35Q96QK1 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC19.39■□□□□ 0.69
VPS35Q96QK1 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC19.39■□□□□ 0.69
VPS35Q96QK1 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS35Q96QK1 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS35Q96QK1 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC19.39■□□□□ 0.69
VPS35Q96QK1 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS35Q96QK1 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
VPS35Q96QK1 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
VPS35Q96QK1 NME1-207ENST00000480143 964 ntTSL 2 BASIC19.39■□□□□ 0.69
VPS35Q96QK1 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC19.39■□□□□ 0.69
VPS35Q96QK1 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS35Q96QK1 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC19.39■□□□□ 0.69
VPS35Q96QK1 MME-217ENST00000616757 1315 ntTSL 5 BASIC19.39■□□□□ 0.69
VPS35Q96QK1 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS35Q96QK1 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS35Q96QK1 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS35Q96QK1 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS35Q96QK1 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.39■□□□□ 0.69
VPS35Q96QK1 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS35Q96QK1 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS35Q96QK1 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS35Q96QK1 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
VPS35Q96QK1 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS35Q96QK1 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
VPS35Q96QK1 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS35Q96QK1 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC19.38■□□□□ 0.69
VPS35Q96QK1 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VPS35Q96QK1 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC19.38■□□□□ 0.69
VPS35Q96QK1 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC19.38■□□□□ 0.69
VPS35Q96QK1 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS35Q96QK1 KRT8P8-201ENST00000434750 1448 ntBASIC19.38■□□□□ 0.69
VPS35Q96QK1 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC19.38■□□□□ 0.69
VPS35Q96QK1 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC19.38■□□□□ 0.69
VPS35Q96QK1 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC19.38■□□□□ 0.69
VPS35Q96QK1 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC19.38■□□□□ 0.69
VPS35Q96QK1 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS35Q96QK1 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC19.38■□□□□ 0.69
VPS35Q96QK1 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VPS35Q96QK1 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VPS35Q96QK1 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC19.38■□□□□ 0.69
VPS35Q96QK1 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC19.38■□□□□ 0.69
VPS35Q96QK1 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms