Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS39Q96JC1 BX276092.2-201ENST00000417668 665 ntBASIC19.58■□□□□ 0.72
VPS39Q96JC1 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC19.58■□□□□ 0.72
VPS39Q96JC1 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC19.58■□□□□ 0.72
VPS39Q96JC1 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS39Q96JC1 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
VPS39Q96JC1 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS39Q96JC1 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
VPS39Q96JC1 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS39Q96JC1 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
VPS39Q96JC1 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
VPS39Q96JC1 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.58■□□□□ 0.72
VPS39Q96JC1 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC19.58■□□□□ 0.72
VPS39Q96JC1 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC19.58■□□□□ 0.72
VPS39Q96JC1 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC19.58■□□□□ 0.72
VPS39Q96JC1 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC19.58■□□□□ 0.72
VPS39Q96JC1 TNXA-203ENST00000507684 2038 ntBASIC19.58■□□□□ 0.72
VPS39Q96JC1 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS39Q96JC1 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
VPS39Q96JC1 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC19.57■□□□□ 0.72
VPS39Q96JC1 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
VPS39Q96JC1 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS39Q96JC1 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS39Q96JC1 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC19.57■□□□□ 0.72
VPS39Q96JC1 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC19.57■□□□□ 0.72
VPS39Q96JC1 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
VPS39Q96JC1 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS39Q96JC1 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC19.57■□□□□ 0.72
VPS39Q96JC1 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
VPS39Q96JC1 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC19.57■□□□□ 0.72
VPS39Q96JC1 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS39Q96JC1 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VPS39Q96JC1 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS39Q96JC1 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS39Q96JC1 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC19.57■□□□□ 0.72
VPS39Q96JC1 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VPS39Q96JC1 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS39Q96JC1 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS39Q96JC1 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC19.56■□□□□ 0.72
VPS39Q96JC1 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS39Q96JC1 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS39Q96JC1 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC19.56■□□□□ 0.72
VPS39Q96JC1 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC19.56■□□□□ 0.72
VPS39Q96JC1 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
VPS39Q96JC1 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC19.56■□□□□ 0.72
VPS39Q96JC1 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC19.56■□□□□ 0.72
VPS39Q96JC1 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC19.56■□□□□ 0.72
VPS39Q96JC1 RAP2CP1-201ENST00000605103 478 ntBASIC19.56■□□□□ 0.72
VPS39Q96JC1 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC19.56■□□□□ 0.72
VPS39Q96JC1 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS39Q96JC1 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
VPS39Q96JC1 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
VPS39Q96JC1 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC19.56■□□□□ 0.72
VPS39Q96JC1 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS39Q96JC1 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC19.56■□□□□ 0.72
VPS39Q96JC1 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19.56■□□□□ 0.72
VPS39Q96JC1 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
VPS39Q96JC1 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS39Q96JC1 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS39Q96JC1 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC19.55■□□□□ 0.72
VPS39Q96JC1 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC19.55■□□□□ 0.72
VPS39Q96JC1 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS39Q96JC1 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS39Q96JC1 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC19.55■□□□□ 0.72
VPS39Q96JC1 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
VPS39Q96JC1 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS39Q96JC1 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS39Q96JC1 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS39Q96JC1 AL390719.1-204ENST00000412397 1219 ntBASIC19.55■□□□□ 0.72
VPS39Q96JC1 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC19.55■□□□□ 0.72
VPS39Q96JC1 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC19.55■□□□□ 0.72
VPS39Q96JC1 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
VPS39Q96JC1 VPS53-216ENST00000574029 585 ntTSL 4 BASIC19.55■□□□□ 0.72
VPS39Q96JC1 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VPS39Q96JC1 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VPS39Q96JC1 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS39Q96JC1 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS39Q96JC1 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
VPS39Q96JC1 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC19.55■□□□□ 0.72
VPS39Q96JC1 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC19.55■□□□□ 0.72
VPS39Q96JC1 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS39Q96JC1 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS39Q96JC1 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VPS39Q96JC1 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC19.54■□□□□ 0.72
VPS39Q96JC1 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS39Q96JC1 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VPS39Q96JC1 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC19.54■□□□□ 0.72
VPS39Q96JC1 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC19.54■□□□□ 0.72
VPS39Q96JC1 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC19.54■□□□□ 0.72
VPS39Q96JC1 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS39Q96JC1 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS39Q96JC1 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
VPS39Q96JC1 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19.54■□□□□ 0.72
VPS39Q96JC1 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
VPS39Q96JC1 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS39Q96JC1 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS39Q96JC1 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS39Q96JC1 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
VPS39Q96JC1 CROCCP5-201ENST00000436658 830 ntBASIC19.54■□□□□ 0.72
VPS39Q96JC1 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms