Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VMP1Q96GC9 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VMP1Q96GC9 AC006058.3-201ENST00000606217 1069 ntBASIC18.69■□□□□ 0.58
VMP1Q96GC9 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC18.69■□□□□ 0.58
VMP1Q96GC9 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VMP1Q96GC9 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VMP1Q96GC9 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC18.69■□□□□ 0.58
VMP1Q96GC9 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VMP1Q96GC9 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VMP1Q96GC9 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
VMP1Q96GC9 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.69■□□□□ 0.58
VMP1Q96GC9 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
VMP1Q96GC9 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
VMP1Q96GC9 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
VMP1Q96GC9 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VMP1Q96GC9 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
VMP1Q96GC9 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VMP1Q96GC9 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VMP1Q96GC9 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VMP1Q96GC9 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
VMP1Q96GC9 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC18.68■□□□□ 0.58
VMP1Q96GC9 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VMP1Q96GC9 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC18.68■□□□□ 0.58
VMP1Q96GC9 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VMP1Q96GC9 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VMP1Q96GC9 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VMP1Q96GC9 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
VMP1Q96GC9 ABHD17AP6-201ENST00000458502 1044 ntBASIC18.68■□□□□ 0.58
VMP1Q96GC9 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VMP1Q96GC9 AC008687.6-201ENST00000596318 630 ntBASIC18.68■□□□□ 0.58
VMP1Q96GC9 AC006557.6-201ENST00000623071 864 ntBASIC18.68■□□□□ 0.58
VMP1Q96GC9 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
VMP1Q96GC9 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC18.68■□□□□ 0.58
VMP1Q96GC9 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC18.68■□□□□ 0.58
VMP1Q96GC9 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC18.68■□□□□ 0.58
VMP1Q96GC9 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VMP1Q96GC9 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.68■□□□□ 0.58
VMP1Q96GC9 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VMP1Q96GC9 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VMP1Q96GC9 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VMP1Q96GC9 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VMP1Q96GC9 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.68■□□□□ 0.58
VMP1Q96GC9 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC18.68■□□□□ 0.58
VMP1Q96GC9 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VMP1Q96GC9 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC18.68■□□□□ 0.58
VMP1Q96GC9 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC18.68■□□□□ 0.58
VMP1Q96GC9 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VMP1Q96GC9 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VMP1Q96GC9 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC18.67■□□□□ 0.58
VMP1Q96GC9 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC18.67■□□□□ 0.58
VMP1Q96GC9 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VMP1Q96GC9 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
VMP1Q96GC9 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC18.67■□□□□ 0.58
VMP1Q96GC9 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VMP1Q96GC9 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC18.67■□□□□ 0.58
VMP1Q96GC9 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VMP1Q96GC9 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC18.67■□□□□ 0.58
VMP1Q96GC9 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VMP1Q96GC9 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VMP1Q96GC9 HLA-G-202ENST00000376815 851 ntBASIC18.67■□□□□ 0.58
VMP1Q96GC9 HLA-G-203ENST00000376818 1127 ntBASIC18.67■□□□□ 0.58
VMP1Q96GC9 KRT17P3-201ENST00000420566 1262 ntBASIC18.67■□□□□ 0.58
VMP1Q96GC9 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC18.67■□□□□ 0.58
VMP1Q96GC9 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC18.67■□□□□ 0.58
VMP1Q96GC9 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
VMP1Q96GC9 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
VMP1Q96GC9 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VMP1Q96GC9 AC004408.2-201ENST00000623613 2777 ntBASIC18.67■□□□□ 0.58
VMP1Q96GC9 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC18.67■□□□□ 0.58
VMP1Q96GC9 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VMP1Q96GC9 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
VMP1Q96GC9 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
VMP1Q96GC9 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
VMP1Q96GC9 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC18.66■□□□□ 0.58
VMP1Q96GC9 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
VMP1Q96GC9 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VMP1Q96GC9 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VMP1Q96GC9 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
VMP1Q96GC9 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
VMP1Q96GC9 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
VMP1Q96GC9 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VMP1Q96GC9 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
VMP1Q96GC9 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC18.66■□□□□ 0.58
VMP1Q96GC9 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC18.66■□□□□ 0.58
VMP1Q96GC9 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
VMP1Q96GC9 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC18.66■□□□□ 0.58
VMP1Q96GC9 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC18.66■□□□□ 0.58
VMP1Q96GC9 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VMP1Q96GC9 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
VMP1Q96GC9 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VMP1Q96GC9 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC18.66■□□□□ 0.58
VMP1Q96GC9 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
VMP1Q96GC9 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VMP1Q96GC9 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VMP1Q96GC9 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VMP1Q96GC9 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC18.66■□□□□ 0.58
VMP1Q96GC9 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
VMP1Q96GC9 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC18.65■□□□□ 0.58
VMP1Q96GC9 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
VMP1Q96GC9 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms