Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CPNE4Q96A23 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CPNE4Q96A23 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CPNE4Q96A23 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC17.55■□□□□ 0.4
CPNE4Q96A23 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
CPNE4Q96A23 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CPNE4Q96A23 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
CPNE4Q96A23 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CPNE4Q96A23 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17.55■□□□□ 0.4
CPNE4Q96A23 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
CPNE4Q96A23 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
CPNE4Q96A23 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
CPNE4Q96A23 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CPNE4Q96A23 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
CPNE4Q96A23 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
CPNE4Q96A23 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC17.55■□□□□ 0.4
CPNE4Q96A23 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC17.55■□□□□ 0.4
CPNE4Q96A23 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC17.55■□□□□ 0.4
CPNE4Q96A23 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC17.55■□□□□ 0.4
CPNE4Q96A23 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CPNE4Q96A23 USP36-216ENST00000589424 970 ntTSL 5 BASIC17.55■□□□□ 0.4
CPNE4Q96A23 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC17.55■□□□□ 0.4
CPNE4Q96A23 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC17.55■□□□□ 0.4
CPNE4Q96A23 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC17.55■□□□□ 0.4
CPNE4Q96A23 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CPNE4Q96A23 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC17.55■□□□□ 0.4
CPNE4Q96A23 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
CPNE4Q96A23 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CPNE4Q96A23 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CPNE4Q96A23 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CPNE4Q96A23 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC17.55■□□□□ 0.4
CPNE4Q96A23 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC17.55■□□□□ 0.4
CPNE4Q96A23 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CPNE4Q96A23 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC17.54■□□□□ 0.4
CPNE4Q96A23 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC17.54■□□□□ 0.4
CPNE4Q96A23 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
CPNE4Q96A23 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CPNE4Q96A23 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CPNE4Q96A23 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC17.54■□□□□ 0.4
CPNE4Q96A23 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CPNE4Q96A23 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CPNE4Q96A23 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
CPNE4Q96A23 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
CPNE4Q96A23 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CPNE4Q96A23 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CPNE4Q96A23 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
CPNE4Q96A23 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC17.54■□□□□ 0.4
CPNE4Q96A23 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
CPNE4Q96A23 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC17.54■□□□□ 0.4
CPNE4Q96A23 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
CPNE4Q96A23 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CPNE4Q96A23 AC112907.3-201ENST00000577781 2400 ntBASIC17.54■□□□□ 0.4
CPNE4Q96A23 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CPNE4Q96A23 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CPNE4Q96A23 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
CPNE4Q96A23 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
CPNE4Q96A23 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC17.54■□□□□ 0.4
CPNE4Q96A23 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CPNE4Q96A23 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
CPNE4Q96A23 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC17.53■□□□□ 0.4
CPNE4Q96A23 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CPNE4Q96A23 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC17.53■□□□□ 0.4
CPNE4Q96A23 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CPNE4Q96A23 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CPNE4Q96A23 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CPNE4Q96A23 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
CPNE4Q96A23 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CPNE4Q96A23 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CPNE4Q96A23 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC17.53■□□□□ 0.4
CPNE4Q96A23 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CPNE4Q96A23 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CPNE4Q96A23 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CPNE4Q96A23 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
CPNE4Q96A23 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CPNE4Q96A23 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CPNE4Q96A23 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CPNE4Q96A23 AC008550.1-201ENST00000511500 884 ntBASIC17.53■□□□□ 0.4
CPNE4Q96A23 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CPNE4Q96A23 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CPNE4Q96A23 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC17.53■□□□□ 0.4
CPNE4Q96A23 DET1-205ENST00000558413 583 ntTSL 4 BASIC17.53■□□□□ 0.4
CPNE4Q96A23 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
CPNE4Q96A23 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC17.53■□□□□ 0.4
CPNE4Q96A23 AP001412.1-201ENST00000608405 714 ntBASIC17.53■□□□□ 0.4
CPNE4Q96A23 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CPNE4Q96A23 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CPNE4Q96A23 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC17.53■□□□□ 0.4
CPNE4Q96A23 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC17.53■□□□□ 0.4
CPNE4Q96A23 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CPNE4Q96A23 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CPNE4Q96A23 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CPNE4Q96A23 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
CPNE4Q96A23 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CPNE4Q96A23 HTR7P1-201ENST00000538670 1336 ntBASIC17.52■□□□□ 0.4
CPNE4Q96A23 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CPNE4Q96A23 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CPNE4Q96A23 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC17.52■□□□□ 0.4
CPNE4Q96A23 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC17.52■□□□□ 0.4
CPNE4Q96A23 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
CPNE4Q96A23 AC012618.2-201ENST00000428058 849 ntBASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 62.3 ms