Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGB4Q8WW32 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGB4Q8WW32 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGB4Q8WW32 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC19.62■□□□□ 0.73
HMGB4Q8WW32 CCR12P-201ENST00000446203 998 ntBASIC19.62■□□□□ 0.73
HMGB4Q8WW32 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC19.62■□□□□ 0.73
HMGB4Q8WW32 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC19.62■□□□□ 0.73
HMGB4Q8WW32 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC19.62■□□□□ 0.73
HMGB4Q8WW32 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC19.62■□□□□ 0.73
HMGB4Q8WW32 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGB4Q8WW32 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HMGB4Q8WW32 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGB4Q8WW32 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGB4Q8WW32 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC19.62■□□□□ 0.73
HMGB4Q8WW32 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
HMGB4Q8WW32 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
HMGB4Q8WW32 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
HMGB4Q8WW32 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.61■□□□□ 0.73
HMGB4Q8WW32 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC19.61■□□□□ 0.73
HMGB4Q8WW32 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGB4Q8WW32 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC19.61■□□□□ 0.73
HMGB4Q8WW32 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
HMGB4Q8WW32 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGB4Q8WW32 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGB4Q8WW32 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
HMGB4Q8WW32 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
HMGB4Q8WW32 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC19.61■□□□□ 0.73
HMGB4Q8WW32 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC19.61■□□□□ 0.73
HMGB4Q8WW32 AC022616.7-201ENST00000525383 220 ntBASIC19.61■□□□□ 0.73
HMGB4Q8WW32 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC19.61■□□□□ 0.73
HMGB4Q8WW32 LTBR-211ENST00000543190 785 ntTSL 3 BASIC19.61■□□□□ 0.73
HMGB4Q8WW32 LINC01238-205ENST00000567549 1107 ntBASIC19.61■□□□□ 0.73
HMGB4Q8WW32 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC19.61■□□□□ 0.73
HMGB4Q8WW32 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC19.61■□□□□ 0.73
HMGB4Q8WW32 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC19.61■□□□□ 0.73
HMGB4Q8WW32 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC19.61■□□□□ 0.73
HMGB4Q8WW32 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGB4Q8WW32 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC19.61■□□□□ 0.73
HMGB4Q8WW32 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGB4Q8WW32 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC19.61■□□□□ 0.73
HMGB4Q8WW32 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
HMGB4Q8WW32 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGB4Q8WW32 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGB4Q8WW32 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HMGB4Q8WW32 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGB4Q8WW32 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HMGB4Q8WW32 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC19.6■□□□□ 0.73
HMGB4Q8WW32 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGB4Q8WW32 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGB4Q8WW32 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGB4Q8WW32 AC096733.2-201ENST00000609937 1394 ntBASIC19.6■□□□□ 0.73
HMGB4Q8WW32 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGB4Q8WW32 GUK1-204ENST00000366721 689 ntTSL 3 BASIC19.6■□□□□ 0.73
HMGB4Q8WW32 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC19.6■□□□□ 0.73
HMGB4Q8WW32 AC091390.4-202ENST00000476426 537 ntBASIC19.6■□□□□ 0.73
HMGB4Q8WW32 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC19.6■□□□□ 0.73
HMGB4Q8WW32 GPX4-207ENST00000589115 812 ntTSL 2 BASIC19.6■□□□□ 0.73
HMGB4Q8WW32 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HMGB4Q8WW32 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGB4Q8WW32 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGB4Q8WW32 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGB4Q8WW32 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGB4Q8WW32 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.6■□□□□ 0.73
HMGB4Q8WW32 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HMGB4Q8WW32 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGB4Q8WW32 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HMGB4Q8WW32 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC19.6■□□□□ 0.73
HMGB4Q8WW32 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
HMGB4Q8WW32 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
HMGB4Q8WW32 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC19.6■□□□□ 0.73
HMGB4Q8WW32 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HMGB4Q8WW32 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HMGB4Q8WW32 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HMGB4Q8WW32 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
HMGB4Q8WW32 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.59■□□□□ 0.73
HMGB4Q8WW32 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.59■□□□□ 0.73
HMGB4Q8WW32 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
HMGB4Q8WW32 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
HMGB4Q8WW32 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC19.59■□□□□ 0.73
HMGB4Q8WW32 AC117947.1-201ENST00000427448 529 ntBASIC19.59■□□□□ 0.73
HMGB4Q8WW32 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC19.59■□□□□ 0.73
HMGB4Q8WW32 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC19.59■□□□□ 0.73
HMGB4Q8WW32 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HMGB4Q8WW32 AC063952.2-201ENST00000498792 1227 ntBASIC19.59■□□□□ 0.73
HMGB4Q8WW32 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC19.59■□□□□ 0.73
HMGB4Q8WW32 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC19.59■□□□□ 0.73
HMGB4Q8WW32 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC19.59■□□□□ 0.73
HMGB4Q8WW32 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC19.59■□□□□ 0.73
HMGB4Q8WW32 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC19.59■□□□□ 0.73
HMGB4Q8WW32 AC139887.4-201ENST00000607877 719 ntBASIC19.59■□□□□ 0.73
HMGB4Q8WW32 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
HMGB4Q8WW32 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC19.59■□□□□ 0.73
HMGB4Q8WW32 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
HMGB4Q8WW32 MED25-212ENST00000618715 1467 ntTSL 5 BASIC19.59■□□□□ 0.73
HMGB4Q8WW32 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HMGB4Q8WW32 KRT8P8-201ENST00000434750 1448 ntBASIC19.59■□□□□ 0.73
HMGB4Q8WW32 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC19.59■□□□□ 0.73
HMGB4Q8WW32 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.58■□□□□ 0.73
HMGB4Q8WW32 AC007375.3-201ENST00000600936 2314 ntBASIC19.58■□□□□ 0.73
HMGB4Q8WW32 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms