Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC21.71■■□□□ 1.07
CCDC65Q8IXS2 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.07
CCDC65Q8IXS2 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
CCDC65Q8IXS2 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
CCDC65Q8IXS2 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC65Q8IXS2 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
CCDC65Q8IXS2 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC21.7■■□□□ 1.06
CCDC65Q8IXS2 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC65Q8IXS2 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
CCDC65Q8IXS2 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC21.7■■□□□ 1.06
CCDC65Q8IXS2 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC21.7■■□□□ 1.06
CCDC65Q8IXS2 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC21.7■■□□□ 1.06
CCDC65Q8IXS2 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC21.7■■□□□ 1.06
CCDC65Q8IXS2 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC21.7■■□□□ 1.06
CCDC65Q8IXS2 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC21.7■■□□□ 1.06
CCDC65Q8IXS2 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC65Q8IXS2 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC21.7■■□□□ 1.06
CCDC65Q8IXS2 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
CCDC65Q8IXS2 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC65Q8IXS2 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC65Q8IXS2 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC65Q8IXS2 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
CCDC65Q8IXS2 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC65Q8IXS2 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC65Q8IXS2 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC21.69■■□□□ 1.06
CCDC65Q8IXS2 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC65Q8IXS2 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC21.69■■□□□ 1.06
CCDC65Q8IXS2 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
CCDC65Q8IXS2 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC65Q8IXS2 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC65Q8IXS2 ESRRAP1-201ENST00000400596 1257 ntBASIC21.69■■□□□ 1.06
CCDC65Q8IXS2 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC21.69■■□□□ 1.06
CCDC65Q8IXS2 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC65Q8IXS2 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC65Q8IXS2 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC65Q8IXS2 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC21.69■■□□□ 1.06
CCDC65Q8IXS2 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC65Q8IXS2 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC65Q8IXS2 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
CCDC65Q8IXS2 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC65Q8IXS2 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC65Q8IXS2 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC21.69■■□□□ 1.06
CCDC65Q8IXS2 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC21.69■■□□□ 1.06
CCDC65Q8IXS2 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
CCDC65Q8IXS2 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC65Q8IXS2 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC21.69■■□□□ 1.06
CCDC65Q8IXS2 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC21.69■■□□□ 1.06
CCDC65Q8IXS2 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC65Q8IXS2 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC65Q8IXS2 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC21.68■■□□□ 1.06
CCDC65Q8IXS2 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC65Q8IXS2 AC116562.4-201ENST00000641316 2276 ntBASIC21.68■■□□□ 1.06
CCDC65Q8IXS2 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC65Q8IXS2 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC65Q8IXS2 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC65Q8IXS2 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC65Q8IXS2 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC65Q8IXS2 CD99P1-205ENST00000527459 561 ntBASIC21.68■■□□□ 1.06
CCDC65Q8IXS2 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC21.68■■□□□ 1.06
CCDC65Q8IXS2 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC65Q8IXS2 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC21.68■■□□□ 1.06
CCDC65Q8IXS2 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC65Q8IXS2 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC65Q8IXS2 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC65Q8IXS2 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC65Q8IXS2 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC65Q8IXS2 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC21.68■■□□□ 1.06
CCDC65Q8IXS2 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC65Q8IXS2 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC21.67■■□□□ 1.06
CCDC65Q8IXS2 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC21.67■■□□□ 1.06
CCDC65Q8IXS2 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC21.67■■□□□ 1.06
CCDC65Q8IXS2 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC21.67■■□□□ 1.06
CCDC65Q8IXS2 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC65Q8IXS2 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
CCDC65Q8IXS2 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC65Q8IXS2 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC21.67■■□□□ 1.06
CCDC65Q8IXS2 AC069544.1-201ENST00000609399 999 ntBASIC21.67■■□□□ 1.06
CCDC65Q8IXS2 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC65Q8IXS2 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC65Q8IXS2 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
CCDC65Q8IXS2 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC65Q8IXS2 AC093484.2-201ENST00000580996 2166 ntBASIC21.67■■□□□ 1.06
CCDC65Q8IXS2 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
CCDC65Q8IXS2 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC65Q8IXS2 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
CCDC65Q8IXS2 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
CCDC65Q8IXS2 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC21.66■■□□□ 1.06
CCDC65Q8IXS2 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC21.66■■□□□ 1.06
CCDC65Q8IXS2 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC65Q8IXS2 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC65Q8IXS2 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC65Q8IXS2 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC21.66■■□□□ 1.06
CCDC65Q8IXS2 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC21.66■■□□□ 1.06
CCDC65Q8IXS2 KRT18P16-201ENST00000510337 1294 ntBASIC21.66■■□□□ 1.06
CCDC65Q8IXS2 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC21.66■■□□□ 1.06
CCDC65Q8IXS2 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
CCDC65Q8IXS2 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC65Q8IXS2 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC65Q8IXS2 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC65Q8IXS2 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms