Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC28AQ8IWP9 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC16.32■□□□□ 0.2
CCDC28AQ8IWP9 EXOG-217ENST00000630638 197 ntTSL 5 BASIC16.32■□□□□ 0.2
CCDC28AQ8IWP9 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC16.32■□□□□ 0.2
CCDC28AQ8IWP9 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC28AQ8IWP9 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
CCDC28AQ8IWP9 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC28AQ8IWP9 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC28AQ8IWP9 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CCDC28AQ8IWP9 USP49-202ENST00000373010 2446 ntTSL 5 BASIC16.31■□□□□ 0.2
CCDC28AQ8IWP9 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC16.31■□□□□ 0.2
CCDC28AQ8IWP9 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC28AQ8IWP9 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC28AQ8IWP9 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC16.31■□□□□ 0.2
CCDC28AQ8IWP9 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC16.31■□□□□ 0.2
CCDC28AQ8IWP9 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC28AQ8IWP9 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC16.31■□□□□ 0.2
CCDC28AQ8IWP9 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC28AQ8IWP9 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC28AQ8IWP9 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC28AQ8IWP9 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
CCDC28AQ8IWP9 USP45-205ENST00000472914 1617 ntTSL 5 BASIC16.31■□□□□ 0.2
CCDC28AQ8IWP9 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC28AQ8IWP9 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC16.31■□□□□ 0.2
CCDC28AQ8IWP9 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CCDC28AQ8IWP9 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC16.31■□□□□ 0.2
CCDC28AQ8IWP9 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC28AQ8IWP9 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC28AQ8IWP9 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC16.31■□□□□ 0.2
CCDC28AQ8IWP9 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC16.31■□□□□ 0.2
CCDC28AQ8IWP9 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC28AQ8IWP9 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC28AQ8IWP9 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC16.31■□□□□ 0.2
CCDC28AQ8IWP9 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CCDC28AQ8IWP9 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC28AQ8IWP9 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC28AQ8IWP9 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
CCDC28AQ8IWP9 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC16.31■□□□□ 0.2
CCDC28AQ8IWP9 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC28AQ8IWP9 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC28AQ8IWP9 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC28AQ8IWP9 AC121338.2-201ENST00000622535 1744 ntBASIC16.31■□□□□ 0.2
CCDC28AQ8IWP9 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC28AQ8IWP9 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
CCDC28AQ8IWP9 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC28AQ8IWP9 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC28AQ8IWP9 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC28AQ8IWP9 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC28AQ8IWP9 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC28AQ8IWP9 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
CCDC28AQ8IWP9 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC28AQ8IWP9 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC16.3■□□□□ 0.2
CCDC28AQ8IWP9 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC16.3■□□□□ 0.2
CCDC28AQ8IWP9 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC28AQ8IWP9 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CCDC28AQ8IWP9 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC16.3■□□□□ 0.2
CCDC28AQ8IWP9 CD72-202ENST00000378430 585 ntTSL 3 BASIC16.3■□□□□ 0.2
CCDC28AQ8IWP9 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC16.3■□□□□ 0.2
CCDC28AQ8IWP9 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC16.3■□□□□ 0.2
CCDC28AQ8IWP9 AL031602.1-201ENST00000633169 911 ntBASIC16.3■□□□□ 0.2
CCDC28AQ8IWP9 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC16.3■□□□□ 0.2
CCDC28AQ8IWP9 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC16.3■□□□□ 0.2
CCDC28AQ8IWP9 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC28AQ8IWP9 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC28AQ8IWP9 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC28AQ8IWP9 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
CCDC28AQ8IWP9 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
CCDC28AQ8IWP9 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC28AQ8IWP9 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
CCDC28AQ8IWP9 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC28AQ8IWP9 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC16.3■□□□□ 0.2
CCDC28AQ8IWP9 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC16.3■□□□□ 0.2
CCDC28AQ8IWP9 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CCDC28AQ8IWP9 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC16.29■□□□□ 0.2
CCDC28AQ8IWP9 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28AQ8IWP9 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28AQ8IWP9 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28AQ8IWP9 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28AQ8IWP9 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28AQ8IWP9 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28AQ8IWP9 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28AQ8IWP9 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28AQ8IWP9 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC16.29■□□□□ 0.2
CCDC28AQ8IWP9 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
CCDC28AQ8IWP9 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28AQ8IWP9 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28AQ8IWP9 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28AQ8IWP9 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28AQ8IWP9 TFPT-201ENST00000391757 774 ntTSL 5 BASIC16.29■□□□□ 0.2
CCDC28AQ8IWP9 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28AQ8IWP9 HES6-204ENST00000409182 863 ntTSL 2 BASIC16.29■□□□□ 0.2
CCDC28AQ8IWP9 AL499627.2-201ENST00000606283 725 ntBASIC16.29■□□□□ 0.2
CCDC28AQ8IWP9 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28AQ8IWP9 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28AQ8IWP9 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28AQ8IWP9 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28AQ8IWP9 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28AQ8IWP9 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
CCDC28AQ8IWP9 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28AQ8IWP9 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 62.1 ms