Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
PKNOX1P55347 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC19.15■□□□□ 0.66
PKNOX1P55347 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC19.15■□□□□ 0.66
PKNOX1P55347 AC022517.1-201ENST00000592429 346 ntBASIC19.15■□□□□ 0.66
PKNOX1P55347 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PKNOX1P55347 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
PKNOX1P55347 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC19.15■□□□□ 0.66
PKNOX1P55347 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC19.15■□□□□ 0.66
PKNOX1P55347 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PKNOX1P55347 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PKNOX1P55347 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PKNOX1P55347 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
PKNOX1P55347 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC19.15■□□□□ 0.66
PKNOX1P55347 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC19.15■□□□□ 0.66
PKNOX1P55347 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC19.15■□□□□ 0.66
PKNOX1P55347 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.66
PKNOX1P55347 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
PKNOX1P55347 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
PKNOX1P55347 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
PKNOX1P55347 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC19.14■□□□□ 0.65
PKNOX1P55347 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC19.14■□□□□ 0.65
PKNOX1P55347 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
PKNOX1P55347 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC19.14■□□□□ 0.65
PKNOX1P55347 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PKNOX1P55347 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PKNOX1P55347 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PKNOX1P55347 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
PKNOX1P55347 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC19.14■□□□□ 0.65
PKNOX1P55347 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PKNOX1P55347 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PKNOX1P55347 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PKNOX1P55347 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
PKNOX1P55347 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
PKNOX1P55347 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC19.14■□□□□ 0.65
PKNOX1P55347 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC19.14■□□□□ 0.65
PKNOX1P55347 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PKNOX1P55347 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC19.14■□□□□ 0.65
PKNOX1P55347 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
PKNOX1P55347 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
PKNOX1P55347 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PKNOX1P55347 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
PKNOX1P55347 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PKNOX1P55347 AC026471.1-201ENST00000564629 3026 ntBASIC19.14■□□□□ 0.65
PKNOX1P55347 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
PKNOX1P55347 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PKNOX1P55347 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
PKNOX1P55347 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC19.13■□□□□ 0.65
PKNOX1P55347 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PKNOX1P55347 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PKNOX1P55347 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
PKNOX1P55347 AC004911.1-201ENST00000416316 871 ntBASIC19.13■□□□□ 0.65
PKNOX1P55347 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PKNOX1P55347 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC19.13■□□□□ 0.65
PKNOX1P55347 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC19.13■□□□□ 0.65
PKNOX1P55347 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
PKNOX1P55347 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PKNOX1P55347 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC19.13■□□□□ 0.65
PKNOX1P55347 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PKNOX1P55347 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC19.13■□□□□ 0.65
PKNOX1P55347 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PKNOX1P55347 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PKNOX1P55347 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PKNOX1P55347 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PKNOX1P55347 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
PKNOX1P55347 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC19.13■□□□□ 0.65
PKNOX1P55347 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PKNOX1P55347 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PKNOX1P55347 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
PKNOX1P55347 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
PKNOX1P55347 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC19.12■□□□□ 0.65
PKNOX1P55347 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PKNOX1P55347 TP73-202ENST00000354437 2140 ntTSL 5 BASIC19.12■□□□□ 0.65
PKNOX1P55347 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PKNOX1P55347 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PKNOX1P55347 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC19.12■□□□□ 0.65
PKNOX1P55347 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC19.12■□□□□ 0.65
PKNOX1P55347 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC19.12■□□□□ 0.65
PKNOX1P55347 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC19.12■□□□□ 0.65
PKNOX1P55347 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC19.12■□□□□ 0.65
PKNOX1P55347 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
PKNOX1P55347 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PKNOX1P55347 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PKNOX1P55347 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PKNOX1P55347 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
PKNOX1P55347 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
PKNOX1P55347 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC19.12■□□□□ 0.65
PKNOX1P55347 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC19.12■□□□□ 0.65
PKNOX1P55347 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PKNOX1P55347 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PKNOX1P55347 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
PKNOX1P55347 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PKNOX1P55347 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PKNOX1P55347 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC19.11■□□□□ 0.65
PKNOX1P55347 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
PKNOX1P55347 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PKNOX1P55347 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
PKNOX1P55347 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC19.11■□□□□ 0.65
PKNOX1P55347 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PKNOX1P55347 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC19.11■□□□□ 0.65
PKNOX1P55347 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms