Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
LIMK1P53667 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC19.34■□□□□ 0.69
LIMK1P53667 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC19.34■□□□□ 0.69
LIMK1P53667 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIMK1P53667 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIMK1P53667 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC19.33■□□□□ 0.69
LIMK1P53667 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
LIMK1P53667 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
LIMK1P53667 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
LIMK1P53667 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
LIMK1P53667 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC19.33■□□□□ 0.69
LIMK1P53667 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
LIMK1P53667 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
LIMK1P53667 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.33■□□□□ 0.69
LIMK1P53667 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
LIMK1P53667 HIST1H2APS4-201ENST00000362070 348 ntBASIC19.33■□□□□ 0.68
LIMK1P53667 SLC25A1P2-201ENST00000430693 912 ntBASIC19.33■□□□□ 0.68
LIMK1P53667 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC19.33■□□□□ 0.68
LIMK1P53667 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC19.33■□□□□ 0.68
LIMK1P53667 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC19.33■□□□□ 0.68
LIMK1P53667 AC131212.4-201ENST00000623606 975 ntBASIC19.33■□□□□ 0.68
LIMK1P53667 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC19.33■□□□□ 0.68
LIMK1P53667 AC141257.4-201ENST00000634557 245 ntBASIC19.33■□□□□ 0.68
LIMK1P53667 AC136944.6-201ENST00000634818 245 ntBASIC19.33■□□□□ 0.68
LIMK1P53667 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
LIMK1P53667 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
LIMK1P53667 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
LIMK1P53667 KRT8P36-201ENST00000489121 1440 ntBASIC19.33■□□□□ 0.68
LIMK1P53667 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC19.33■□□□□ 0.68
LIMK1P53667 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIMK1P53667 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
LIMK1P53667 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIMK1P53667 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
LIMK1P53667 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LIMK1P53667 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
LIMK1P53667 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIMK1P53667 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC19.32■□□□□ 0.68
LIMK1P53667 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIMK1P53667 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIMK1P53667 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIMK1P53667 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIMK1P53667 DAP-202ENST00000432074 1048 ntTSL 2 BASIC19.32■□□□□ 0.68
LIMK1P53667 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC19.32■□□□□ 0.68
LIMK1P53667 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIMK1P53667 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC19.32■□□□□ 0.68
LIMK1P53667 SLC25A1P4-201ENST00000567977 778 ntBASIC19.32■□□□□ 0.68
LIMK1P53667 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC19.32■□□□□ 0.68
LIMK1P53667 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC19.32■□□□□ 0.68
LIMK1P53667 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LIMK1P53667 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC19.32■□□□□ 0.68
LIMK1P53667 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIMK1P53667 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC19.32■□□□□ 0.68
LIMK1P53667 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIMK1P53667 LINC01006-201ENST00000333319 2292 ntBASIC19.32■□□□□ 0.68
LIMK1P53667 ME2-206ENST00000638410 2289 ntTSL 5 BASIC19.32■□□□□ 0.68
LIMK1P53667 ME2-210ENST00000639255 2262 ntTSL 5 BASIC19.32■□□□□ 0.68
LIMK1P53667 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIMK1P53667 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIMK1P53667 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIMK1P53667 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
LIMK1P53667 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIMK1P53667 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIMK1P53667 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
LIMK1P53667 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIMK1P53667 AC005332.1-201ENST00000577698 1310 ntBASIC19.31■□□□□ 0.68
LIMK1P53667 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIMK1P53667 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
LIMK1P53667 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.31■□□□□ 0.68
LIMK1P53667 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIMK1P53667 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
LIMK1P53667 ANKRD20A18P-201ENST00000359341 492 ntBASIC19.31■□□□□ 0.68
LIMK1P53667 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIMK1P53667 AL671277.2-201ENST00000458060 996 ntBASIC19.31■□□□□ 0.68
LIMK1P53667 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC19.31■□□□□ 0.68
LIMK1P53667 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
LIMK1P53667 AL512604.3-201ENST00000569583 964 ntBASIC19.31■□□□□ 0.68
LIMK1P53667 AC130371.2-201ENST00000619443 611 ntBASIC19.31■□□□□ 0.68
LIMK1P53667 AC011558.1-201ENST00000623459 338 ntBASIC19.31■□□□□ 0.68
LIMK1P53667 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
LIMK1P53667 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIMK1P53667 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIMK1P53667 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIMK1P53667 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
LIMK1P53667 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.31■□□□□ 0.68
LIMK1P53667 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIMK1P53667 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIMK1P53667 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIMK1P53667 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LIMK1P53667 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIMK1P53667 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.3■□□□□ 0.68
LIMK1P53667 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
LIMK1P53667 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LIMK1P53667 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC19.3■□□□□ 0.68
LIMK1P53667 FDX2-206ENST00000492239 773 ntTSL 2 BASIC19.3■□□□□ 0.68
LIMK1P53667 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LIMK1P53667 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LIMK1P53667 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC19.3■□□□□ 0.68
LIMK1P53667 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC19.3■□□□□ 0.68
LIMK1P53667 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC19.3■□□□□ 0.68
LIMK1P53667 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms