Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
PTPN4P29074 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC19.57■□□□□ 0.72
PTPN4P29074 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PTPN4P29074 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.57■□□□□ 0.72
PTPN4P29074 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC19.57■□□□□ 0.72
PTPN4P29074 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PTPN4P29074 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
PTPN4P29074 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
PTPN4P29074 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PTPN4P29074 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PTPN4P29074 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
PTPN4P29074 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC19.56■□□□□ 0.72
PTPN4P29074 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
PTPN4P29074 AC120498.9-201ENST00000339021 3867 ntBASIC19.56■□□□□ 0.72
PTPN4P29074 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PTPN4P29074 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC19.56■□□□□ 0.72
PTPN4P29074 OR2A1-AS1-201ENST00000462305 773 ntBASIC19.56■□□□□ 0.72
PTPN4P29074 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC19.56■□□□□ 0.72
PTPN4P29074 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC19.56■□□□□ 0.72
PTPN4P29074 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
PTPN4P29074 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
PTPN4P29074 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
PTPN4P29074 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC19.56■□□□□ 0.72
PTPN4P29074 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.72
PTPN4P29074 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC19.56■□□□□ 0.72
PTPN4P29074 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
PTPN4P29074 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PTPN4P29074 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PTPN4P29074 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PTPN4P29074 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PTPN4P29074 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PTPN4P29074 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC19.55■□□□□ 0.72
PTPN4P29074 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
PTPN4P29074 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PTPN4P29074 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
PTPN4P29074 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC19.55■□□□□ 0.72
PTPN4P29074 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC19.55■□□□□ 0.72
PTPN4P29074 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
PTPN4P29074 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC19.55■□□□□ 0.72
PTPN4P29074 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
PTPN4P29074 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC19.55■□□□□ 0.72
PTPN4P29074 AL049812.1-201ENST00000432563 2267 ntBASIC19.55■□□□□ 0.72
PTPN4P29074 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PTPN4P29074 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
PTPN4P29074 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
PTPN4P29074 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
PTPN4P29074 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PTPN4P29074 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
PTPN4P29074 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC19.54■□□□□ 0.72
PTPN4P29074 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PTPN4P29074 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
PTPN4P29074 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
PTPN4P29074 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC19.54■□□□□ 0.72
PTPN4P29074 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC19.54■□□□□ 0.72
PTPN4P29074 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
PTPN4P29074 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
PTPN4P29074 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC19.54■□□□□ 0.72
PTPN4P29074 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PTPN4P29074 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PTPN4P29074 PRORSD1P-201ENST00000295112 541 ntBASIC19.54■□□□□ 0.72
PTPN4P29074 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC19.54■□□□□ 0.72
PTPN4P29074 ESRRAP1-201ENST00000400596 1257 ntBASIC19.54■□□□□ 0.72
PTPN4P29074 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC19.54■□□□□ 0.72
PTPN4P29074 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC19.54■□□□□ 0.72
PTPN4P29074 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.54■□□□□ 0.72
PTPN4P29074 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC19.54■□□□□ 0.72
PTPN4P29074 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
PTPN4P29074 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC19.54■□□□□ 0.72
PTPN4P29074 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC19.54■□□□□ 0.72
PTPN4P29074 IRX5-204ENST00000560154 879 ntTSL 5 BASIC19.54■□□□□ 0.72
PTPN4P29074 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC19.54■□□□□ 0.72
PTPN4P29074 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
PTPN4P29074 AC100791.3-201ENST00000617619 330 ntBASIC19.54■□□□□ 0.72
PTPN4P29074 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
PTPN4P29074 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC19.54■□□□□ 0.72
PTPN4P29074 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
PTPN4P29074 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PTPN4P29074 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
PTPN4P29074 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PTPN4P29074 PWWP2AP1-201ENST00000429776 2273 ntBASIC19.54■□□□□ 0.72
PTPN4P29074 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC19.54■□□□□ 0.72
PTPN4P29074 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
PTPN4P29074 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC19.54■□□□□ 0.72
PTPN4P29074 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
PTPN4P29074 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
PTPN4P29074 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC19.53■□□□□ 0.72
PTPN4P29074 AR-207ENST00000612010 3896 ntTSL 5 BASIC19.53■□□□□ 0.72
PTPN4P29074 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
PTPN4P29074 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PTPN4P29074 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
PTPN4P29074 GAS7-202ENST00000396115 929 ntTSL 5 BASIC19.53■□□□□ 0.72
PTPN4P29074 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PTPN4P29074 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC19.53■□□□□ 0.72
PTPN4P29074 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC19.53■□□□□ 0.72
PTPN4P29074 ADM-205ENST00000528544 586 ntTSL 2 BASIC19.53■□□□□ 0.72
PTPN4P29074 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC19.53■□□□□ 0.72
PTPN4P29074 INO80E-214ENST00000620599 515 ntTSL 2 BASIC19.53■□□□□ 0.72
PTPN4P29074 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC19.53■□□□□ 0.72
PTPN4P29074 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC19.53■□□□□ 0.72
PTPN4P29074 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms