Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL9A1P20849 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
COL9A1P20849 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL9A1P20849 TREX2-204ENST00000370212 861 ntTSL 5 BASIC20.17■□□□□ 0.82
COL9A1P20849 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL9A1P20849 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
COL9A1P20849 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL9A1P20849 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC20.17■□□□□ 0.82
COL9A1P20849 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC20.17■□□□□ 0.82
COL9A1P20849 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
COL9A1P20849 AL390719.2-201ENST00000606993 987 ntBASIC20.17■□□□□ 0.82
COL9A1P20849 AL023973.1-201ENST00000624619 620 ntBASIC20.17■□□□□ 0.82
COL9A1P20849 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL9A1P20849 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL9A1P20849 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20.17■□□□□ 0.82
COL9A1P20849 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL9A1P20849 AF106564.1-201ENST00000607058 2553 ntBASIC20.17■□□□□ 0.82
COL9A1P20849 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC20.17■□□□□ 0.82
COL9A1P20849 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL9A1P20849 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC20.16■□□□□ 0.82
COL9A1P20849 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL9A1P20849 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL9A1P20849 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC20.16■□□□□ 0.82
COL9A1P20849 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC20.16■□□□□ 0.82
COL9A1P20849 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC20.16■□□□□ 0.82
COL9A1P20849 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL9A1P20849 AC083849.1-201ENST00000615227 514 ntBASIC20.16■□□□□ 0.82
COL9A1P20849 AL691403.2-201ENST00000618460 490 ntBASIC20.16■□□□□ 0.82
COL9A1P20849 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC20.16■□□□□ 0.82
COL9A1P20849 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL9A1P20849 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL9A1P20849 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
COL9A1P20849 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
COL9A1P20849 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC20.16■□□□□ 0.82
COL9A1P20849 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC20.16■□□□□ 0.82
COL9A1P20849 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC20.16■□□□□ 0.82
COL9A1P20849 H19-201ENST00000411754 1788 ntTSL 5 BASIC20.16■□□□□ 0.82
COL9A1P20849 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL9A1P20849 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC20.15■□□□□ 0.82
COL9A1P20849 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL9A1P20849 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL9A1P20849 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL9A1P20849 HLA-G-202ENST00000376815 851 ntBASIC20.15■□□□□ 0.82
COL9A1P20849 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC20.15■□□□□ 0.82
COL9A1P20849 CCR12P-201ENST00000446203 998 ntBASIC20.15■□□□□ 0.82
COL9A1P20849 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC20.15■□□□□ 0.82
COL9A1P20849 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC20.15■□□□□ 0.82
COL9A1P20849 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL9A1P20849 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.15■□□□□ 0.82
COL9A1P20849 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL9A1P20849 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC20.15■□□□□ 0.82
COL9A1P20849 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.15■□□□□ 0.82
COL9A1P20849 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL9A1P20849 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL9A1P20849 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
COL9A1P20849 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
COL9A1P20849 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.14■□□□□ 0.81
COL9A1P20849 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL9A1P20849 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC20.14■□□□□ 0.81
COL9A1P20849 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
COL9A1P20849 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL9A1P20849 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC20.14■□□□□ 0.81
COL9A1P20849 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL9A1P20849 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
COL9A1P20849 AC005104.2-201ENST00000427818 678 ntBASIC20.14■□□□□ 0.81
COL9A1P20849 AC112907.2-201ENST00000448639 330 ntBASIC20.14■□□□□ 0.81
COL9A1P20849 HLA-J-202ENST00000469281 1241 ntBASIC20.14■□□□□ 0.81
COL9A1P20849 B3GAT3P1-201ENST00000471720 806 ntBASIC20.14■□□□□ 0.81
COL9A1P20849 FDX2-206ENST00000492239 773 ntTSL 2 BASIC20.14■□□□□ 0.81
COL9A1P20849 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC20.14■□□□□ 0.81
COL9A1P20849 PENK-208ENST00000523051 772 ntTSL 5 BASIC20.14■□□□□ 0.81
COL9A1P20849 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC20.14■□□□□ 0.81
COL9A1P20849 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL9A1P20849 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL9A1P20849 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
COL9A1P20849 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL9A1P20849 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL9A1P20849 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
COL9A1P20849 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL9A1P20849 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.13■□□□□ 0.81
COL9A1P20849 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC20.13■□□□□ 0.81
COL9A1P20849 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC20.13■□□□□ 0.81
COL9A1P20849 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL9A1P20849 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL9A1P20849 MRPL3P1-201ENST00000400109 1033 ntBASIC20.13■□□□□ 0.81
COL9A1P20849 NUS1P1-201ENST00000446295 882 ntBASIC20.13■□□□□ 0.81
COL9A1P20849 CYGB-204ENST00000589342 815 ntTSL 3 BASIC20.13■□□□□ 0.81
COL9A1P20849 AC140113.2-201ENST00000604370 208 ntBASIC20.13■□□□□ 0.81
COL9A1P20849 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
COL9A1P20849 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL9A1P20849 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
COL9A1P20849 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COL9A1P20849 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COL9A1P20849 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC20.12■□□□□ 0.81
COL9A1P20849 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
COL9A1P20849 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
COL9A1P20849 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC20.12■□□□□ 0.81
COL9A1P20849 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
COL9A1P20849 KRT8P20-201ENST00000423953 1409 ntBASIC20.12■□□□□ 0.81
COL9A1P20849 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms